Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 2.0e-84 316.2 229 100.0
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 3.7e-54 215.7 137 79.6
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 5.5e-50 201.8 143 72.7
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 9.5e-50 201.1 128 78.9
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.6e-47 193.0 143 71.3
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.8e-46 189.5 146 71.2
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 4.9e-46 188.7 142 71.1
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 4.9e-46 188.7 128 78.9
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.4e-45 187.2 128 76.6
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.8e-45 186.8 141 71.6
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 2.4e-45 186.4 127 78.0
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.1e-45 185.7 128 76.6
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 5.4e-45 185.3 145 71.7
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 5.4e-45 185.3 141 68.8
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 9.2e-45 184.5 144 70.8
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.6e-44 183.7 128 77.3
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 2.7e-44 183.0 144 69.4
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 3.5e-44 182.6 120 78.3
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 3.5e-44 182.6 144 70.8
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 3.5e-44 182.6 126 77.0
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.5e-44 182.6 127 78.0
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 4.5e-44 182.2 144 70.1
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.9e-44 181.8 126 76.2
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 5.9e-44 181.8 126 76.2
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 5.9e-44 181.8 126 76.2
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.0e-43 181.0 128 75.8
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 1.3e-43 180.6 121 77.7
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.9e-43 179.1 126 75.4
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 6.6e-43 178.3 149 67.8
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 1.1e-42 177.6 144 64.6
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.9e-42 176.8 119 75.6
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 1.9e-42 176.8 145 66.9
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 3.3e-42 176.0 115 79.1
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 5.6e-42 175.3 234 50.0
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 5.6e-42 175.3 126 76.2
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 7.3e-42 174.9 123 75.6
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 9.5e-42 174.5 115 78.3
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.6e-41 173.7 124 76.6
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 1.6e-41 173.7 234 54.7
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 1.6e-41 173.7 124 74.2
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 8.0e-41 171.4 144 68.8
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.0e-40 171.0 147 64.6
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.8e-40 170.2 143 65.7
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 2.3e-40 169.9 122 76.2
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 3.1e-40 169.5 126 74.6
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 3.1e-40 169.5 125 72.0
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 5.2e-40 168.7 124 69.4
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 5.2e-40 168.7 112 80.4
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 6.8e-40 168.3 109 80.7
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 8.9e-40 167.9 105 82.9
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 8.9e-40 167.9 112 79.5
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 1.2e-39 167.5 125 74.4
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 1.2e-39 167.5 231 51.5
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 2.0e-39 166.8 130 71.5
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 4.4e-39 165.6 124 71.8
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 4.4e-39 165.6 124 71.8
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 7.5e-39 164.9 128 71.1
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.8e-39 164.5 121 71.9
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.8e-39 164.5 121 71.9
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 9.8e-39 164.5 140 62.9
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 8.3e-38 161.4 123 69.1
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 8.3e-38 161.4 147 66.0
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.1e-37 161.0 117 71.8
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.1e-37 161.0 98 83.7
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.9e-37 160.2 124 70.2
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.9e-37 160.2 144 65.3
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 1.9e-37 160.2 126 68.3
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.4e-37 159.8 129 72.1
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 3.2e-37 159.5 142 66.2
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.1e-37 159.1 124 70.2
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 4.1e-37 159.1 138 66.7
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 4.1e-37 159.1 122 70.5
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 5.4e-37 158.7 117 70.9
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 5.4e-37 158.7 147 58.5
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 7.0e-37 158.3 117 70.9
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 7.0e-37 158.3 137 64.2
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 7.0e-37 158.3 117 70.9
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 7.0e-37 158.3 117 70.9
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 1.2e-36 157.5 121 70.2
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.6e-36 157.1 150 60.7
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.0e-36 156.8 121 68.6
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 2.7e-36 156.4 121 68.6
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 2.7e-36 156.4 120 70.8
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 3.5e-36 156.0 115 71.3
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 3.5e-36 156.0 196 55.6
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 3.5e-36 156.0 196 55.6
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 3.5e-36 156.0 128 69.5
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 4.6e-36 155.6 139 64.7
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 6.0e-36 155.2 120 69.2
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 6.0e-36 155.2 124 68.5
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 7.8e-36 154.8 115 71.3
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 7.8e-36 154.8 115 71.3
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.0e-35 154.5 114 71.1
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.0e-35 154.5 114 71.1
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 1.7e-35 153.7 115 73.0
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.7e-35 153.7 113 70.8
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 2.3e-35 153.3 114 71.9
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 3.0e-35 152.9 128 68.8
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 3.0e-35 152.9 125 65.6
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.9e-35 152.5 153 61.4
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 5.0e-35 152.1 114 71.9
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 5.0e-35 152.1 115 72.2
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 8.6e-35 151.4 147 57.8
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.1e-34 151.0 141 61.0
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.1e-34 151.0 160 55.6
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 1.5e-34 150.6 141 60.3
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 2.5e-34 149.8 94 79.8
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 2.5e-34 149.8 146 63.7
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.3e-34 149.1 140 62.1
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 5.6e-34 148.7 145 64.1
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 5.6e-34 148.7 146 61.6
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 5.6e-34 148.7 114 64.9
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 7.3e-34 148.3 166 53.6
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 7.3e-34 148.3 123 65.9
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.2e-33 147.5 143 67.1
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.2e-33 147.5 143 67.1
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.1e-33 146.7 160 53.8
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.6e-33 146.0 129 67.4
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 6.2e-33 145.2 120 68.3
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 8.0e-33 144.8 121 66.1
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 8.0e-33 144.8 127 66.1
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.1e-32 144.4 128 63.3
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.4e-32 144.1 124 66.1
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.1e-32 142.9 122 68.0
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 3.1e-32 142.9 110 71.8
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 5.2e-32 142.1 118 68.6
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 8.9e-32 141.4 115 67.8
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 8.9e-32 141.4 143 60.1
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.0e-31 140.2 126 66.7
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 5.8e-31 138.7 122 60.7
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 9.8e-31 137.9 144 59.0
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.3e-30 137.5 121 64.5
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.3e-30 137.5 121 64.5
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.3e-30 137.5 160 52.5
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 2.9e-30 136.3 144 56.9
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 4.9e-30 135.6 122 59.8
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 8.3e-30 134.8 138 58.0
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 8.3e-30 134.8 131 61.8
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.1e-29 134.4 142 60.6
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.4e-29 134.0 173 52.0
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.4e-29 134.0 139 59.0
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 9.2e-29 131.3 92 72.8
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.6e-28 130.6 123 56.1
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 4.6e-28 129.0 104 69.2
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 4.6e-28 129.0 104 69.2
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.3e-27 126.7 93 71.0
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.0e-27 126.3 126 59.5
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.0e-27 126.3 158 49.4
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 5.1e-27 125.6 126 58.7
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.6e-27 124.8 143 53.8
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.6e-27 124.8 143 53.8
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.5e-26 124.0 119 59.7
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.5e-26 124.0 119 59.7
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 1.5e-26 124.0 95 69.5
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.9e-26 123.6 104 67.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 2.5e-26 123.2 159 47.2
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.3e-26 122.5 105 66.7
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.3e-26 122.5 105 66.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.6e-25 120.6 100 67.0
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.7e-25 119.0 127 58.3
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 1.4e-24 117.5 62 85.5
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 3.1e-24 116.3 125 54.4
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 6.8e-24 115.2 110 63.6
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 8.9e-24 114.8 62 87.1
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.6e-23 113.2 56 94.6
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 9.9e-23 111.3 145 50.3
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.4e-21 105.5 96 67.7
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 1.6e-20 104.0 134 53.7
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 4.6e-20 102.4 102 61.8
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.0e-19 101.3 118 54.2
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 7.3e-18 95.1 86 67.4
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.2e-15 87.8 147 44.9
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 6.4e-14 82.0 41 82.9
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.2e-13 79.7 92 55.4
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 4.6e-12 75.9 80 55.0
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 6.0e-12 75.5 69 63.8
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 6.0e-12 75.5 69 63.8
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 8.7e-11 71.6 84 53.6
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 8.7e-11 71.6 84 53.6
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 8.7e-11 71.6 84 53.6
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 4.3e-10 69.3 84 52.4
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 6.9e-08 62.0 41 65.9


User provided reference genes

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