Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 2.4e-84 315.5 158 100.0
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 1.3e-34 150.2 127 64.6
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 8.9e-31 137.5 130 62.3
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.7e-29 133.3 128 58.6
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 2.2e-29 132.9 137 56.2
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.2e-28 129.0 131 58.8
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 9.2e-28 127.5 103 63.1
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.5e-25 120.2 133 54.1
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.3e-25 118.6 150 49.3
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.6e-24 116.7 157 48.4
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 6.2e-24 114.8 156 48.1
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 8.0e-24 114.4 121 58.7
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 5.2e-23 111.7 121 52.1
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 8.9e-23 110.9 154 45.5
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.5e-22 110.2 140 46.4
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.3e-21 107.1 142 47.9
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 2.9e-21 105.9 154 40.3
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 6.4e-21 104.8 155 45.2
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 1.4e-20 103.6 148 41.9
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 7.0e-20 101.3 154 41.6
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 9.2e-20 100.9 156 39.7
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 1.2e-19 100.5 150 44.7
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 2.0e-19 99.8 204 36.8
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 3.5e-19 99.0 126 53.2
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 7.8e-19 97.8 153 42.5
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.0e-18 97.4 151 44.4
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.3e-18 97.1 150 41.3
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.7e-18 96.7 132 46.2
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.7e-18 96.7 153 40.5
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 3.9e-18 95.5 118 49.2
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 3.9e-18 95.5 134 48.5
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 5.0e-18 95.1 151 42.4
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.1e-17 94.0 153 41.2
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 1.5e-17 93.6 114 50.0
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.9e-17 93.2 153 43.8
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.9e-17 93.2 153 43.8
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.9e-17 93.2 129 45.7
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 3.3e-17 92.4 128 48.4
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 5.6e-17 91.7 151 42.4
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.2e-16 90.5 136 43.4
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 4.7e-16 88.6 136 47.1
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 4.7e-16 88.6 145 44.8
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.1e-15 87.4 83 54.2
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.1e-15 87.4 155 41.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.4e-15 87.0 83 54.2
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.4e-15 87.0 83 54.2
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.3e-15 86.3 154 39.0
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 5.2e-15 85.1 89 52.8
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 8.9e-15 84.3 154 37.7
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 2.6e-14 82.8 115 45.2
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.4e-14 82.4 149 40.9
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.4e-14 82.0 139 45.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 4.4e-14 82.0 62 66.1
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 1.7e-13 80.1 231 29.9
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 2.2e-13 79.7 136 41.9
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.9e-13 79.3 141 41.8
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.9e-13 79.3 155 41.3
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 4.9e-13 78.6 149 38.9
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 4.9e-13 78.6 162 35.8
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 6.4e-13 78.2 139 43.9
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 8.3e-13 77.8 145 40.7
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.1e-12 77.4 109 46.8
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 1.4e-12 77.0 156 40.4
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.9e-12 76.6 154 38.3
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.9e-12 76.6 136 39.0
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.1e-12 75.5 142 36.6
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 5.4e-12 75.1 129 41.9
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 7.1e-12 74.7 144 38.9
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 9.2e-12 74.3 127 40.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 9.2e-12 74.3 157 39.5
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.2e-11 73.9 135 41.5
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.6e-11 73.6 116 45.7
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.6e-11 73.6 127 41.7
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.7e-11 72.8 136 39.0
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 3.5e-11 72.4 232 30.6
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 4.6e-11 72.0 158 38.6
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 7.8e-11 71.2 105 43.8
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 7.8e-11 71.2 126 41.3
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 7.8e-11 71.2 86 52.3
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.0e-10 70.9 115 43.5
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.3e-10 70.5 151 34.4
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 3.0e-10 69.3 159 38.4
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 3.9e-10 68.9 103 45.6
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 5.1e-10 68.6 42 76.2
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 6.6e-10 68.2 157 33.1
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 8.6e-10 67.8 39 79.5
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 8.6e-10 67.8 39 79.5
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 8.6e-10 67.8 121 38.8
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 8.6e-10 67.8 115 43.5
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 8.6e-10 67.8 147 35.4
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 8.6e-10 67.8 115 42.6
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 1.1e-09 67.4 157 38.2
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.1e-09 67.4 45 71.1
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.5e-09 67.0 80 50.0
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 1.9e-09 66.6 122 41.0
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 1.9e-09 66.6 38 78.9
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 1.9e-09 66.6 132 40.2
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 3.3e-09 65.9 131 36.6
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.3e-09 65.9 129 36.4
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 4.3e-09 65.5 111 41.4
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 1.6e-08 63.5 38 76.3
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 2.8e-08 62.8 133 36.1
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 4.7e-08 62.0 92 39.1
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 8.1e-08 61.2 142 33.1
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.1e-07 60.8 37 75.7
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.4e-07 60.5 106 37.7
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.8e-07 60.1 126 34.9
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 2.3e-07 59.7 60 53.3
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 5.2e-07 58.5 64 50.0
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 5.2e-07 58.5 111 40.5
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 6.8e-07 58.2 38 68.4
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 8.9e-07 57.8 126 33.3
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.0e-06 56.6 143 33.6
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 2.6e-06 56.2 39 64.1
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 4.4e-06 55.5 141 32.6
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 9.9e-06 54.3 39 61.5


User provided reference genes

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