Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 0.0e+00 1679.5 839 100.0
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 0.0e+00 1183.3 808 72.9
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 0.0e+00 1158.7 769 75.8
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1117.8 815 68.7
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1100.9 811 68.7
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 0.0e+00 1099.7 811 68.7
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1099.0 843 66.2
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1095.1 802 68.3
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 0.0e+00 1092.4 816 68.1
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1092.0 839 66.5
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1079.3 849 65.6
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1078.9 826 66.2
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1075.1 823 66.5
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 4.0e-311 1071.2 840 65.0
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 6.9e-311 1070.5 851 64.4
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 3.8e-306 1054.7 709 72.4
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 3.6e-304 1048.1 744 69.4
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.3e-301 1039.6 853 63.4
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.3e-301 1039.6 816 64.8
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 1.7e-301 1039.3 764 68.8
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.7e-301 1039.3 852 63.0
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 2.8e-301 1038.5 660 73.5
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.8e-301 1038.5 844 62.8
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 1.1e-297 1026.5 799 64.5
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 5.5e-297 1024.2 837 61.9
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 7.9e-296 1020.4 832 63.1
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.3e-295 1018.8 825 63.4
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 8.8e-295 1016.9 765 65.1
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 3.3e-294 1015.0 832 62.4
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.2e-291 1006.5 734 65.9
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.0e-291 1005.7 754 65.1
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 5.0e-290 1001.1 789 63.8
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.1e-288 995.7 711 67.1
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 4.7e-288 994.6 805 63.2
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 4.7e-288 994.6 716 68.3
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.0e-287 993.4 733 65.2
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 4.0e-287 991.5 806 62.9
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 6.7e-287 990.7 771 64.7
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 3.3e-286 988.4 730 66.2
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 1.8e-284 982.6 817 61.0
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 2.4e-284 982.2 806 62.5
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 9.1e-284 980.3 828 61.7
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 4.2e-281 971.5 752 64.9
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.6e-280 969.5 767 62.6
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 6.8e-279 964.1 784 62.8
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 8.8e-279 963.8 752 63.0
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 7.5e-278 960.7 785 62.3
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 2.4e-276 955.7 768 62.8
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.1e-276 955.3 840 60.2
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.6e-275 953.0 684 67.0
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.0e-274 950.3 809 60.3
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.3e-274 949.9 839 58.5
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 5.0e-274 948.0 693 65.7
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 5.0e-274 948.0 742 63.3
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.5e-273 946.4 713 64.2
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 2.5e-273 945.7 843 57.7
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 1.6e-272 943.0 784 61.2
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 3.0e-271 938.7 691 65.4
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 8.8e-271 937.2 835 58.3
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 1.2e-270 936.8 691 65.4
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.4e-270 935.3 830 58.0
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 3.4e-270 935.3 702 65.4
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.8e-268 929.5 765 61.3
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 4.1e-268 928.3 830 57.1
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 4.1e-268 928.3 743 62.6
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 9.2e-268 927.2 796 57.9
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 5.9e-267 924.5 765 60.8
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.9e-266 922.2 837 56.9
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 3.8e-266 921.8 833 57.3
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.9e-265 919.5 792 57.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.5e-265 919.1 836 56.0
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 4.3e-265 918.3 743 59.8
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 7.5e-262 907.5 807 56.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.1e-260 903.7 808 57.4
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 7.8e-259 897.5 808 55.2
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.7e-258 896.3 802 55.9
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.7e-258 896.3 802 55.9
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.7e-258 896.3 802 55.9
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 8.9e-255 884.0 685 60.9
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 9.8e-254 880.6 688 61.8
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.7e-253 879.8 654 65.7
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 2.0e-251 872.8 660 65.0
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 1.0e-250 870.5 823 55.3
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 2.5e-249 865.9 777 55.0
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 1.2e-248 863.6 777 56.4
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.6e-246 855.9 547 75.5
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 8.3e-245 850.9 687 59.0
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.4e-244 849.4 764 56.0
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.2e-244 849.0 620 66.8
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 5.6e-241 838.2 573 70.7
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.6e-240 836.6 772 54.9
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 2.1e-240 836.3 754 54.9
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.8e-240 835.9 797 53.8
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 6.2e-240 834.7 781 54.3
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 5.1e-226 788.5 685 57.8
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 5.3e-223 778.5 609 62.6
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.4e-207 726.5 805 50.6
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.4e-199 700.7 680 50.7
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 8.2e-192 674.9 648 52.9
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 8.2e-184 648.3 566 59.2
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.3e-168 597.8 712 46.1
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 2.3e-162 577.0 467 61.2
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 1.8e-151 540.8 433 63.3
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.1e-151 539.7 760 44.6
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.7e-141 507.7 410 67.3
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-134 485.0 535 48.6
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 9.9e-113 412.1 304 68.4
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 2.2e-112 411.0 492 47.2
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.7e-99 367.1 666 33.8
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 8.2e-91 339.3 388 51.8
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.8e-90 338.2 312 56.1
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 9.0e-82 309.3 664 30.4
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 6.5e-72 276.6 704 26.3
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 6.7e-69 266.5 705 26.0
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.0e-66 256.5 206 65.5
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.9e-63 248.4 692 26.7
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.5e-44 185.7 657 24.7
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 4.4e-44 184.1 165 58.2
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 1.7e-43 182.2 150 59.3
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 7.3e-31 140.2 198 38.9
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 6.0e-25 120.6 220 39.1
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 2.3e-16 92.0 82 53.7
SEGI_09142 Sequoiadendron giganteum HOM05D002649 ORTHO05D002838 4.0e-13 81.3 392 25.3
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 1.2e-12 79.7 58 62.1
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 2.0e-12 79.0 730 17.9
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 4.9e-11 74.3 56 62.5
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 6.4e-11 73.9 53 62.3
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.1e-10 73.2 630 17.6
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 4.1e-10 71.2 55 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1594 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-08 66.6 337 22.8
AagrBONN_evm.TU.Sc2ySwM_228.1265 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.6e-08 63.5 334 22.5
SGA_v2.0_scaffold340G49333 Striga asiatica HOM05D000300 ORTHO05D000383 1.5e-07 62.8 175 24.6
AagrBONN_evm.TU.Sc2ySwM_344.4176__4177 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-07 61.6 263 25.1
TAR633G0691 Trochodendron aralioides HOM05D016421 ORTHO05D018216 4.3e-07 61.2 376 21.5
Cc02_g25250 Coffea canephora HOM05D000300 ORTHO05D000383 7.3e-07 60.5 211 25.1
AagrBONN_evm.TU.Sc2ySwM_228.3728 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 325 24.3
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 1.6e-06 59.3 357 21.0
AagrBONN_evm.TU.Sc2ySwM_117.4077 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 58.9 238 23.5
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 58.2 256 21.9
Eucgr.J00110 Eucalyptus grandis HOM05D000001 ORTHO05D000003 3.6e-06 58.2 376 20.2
MSTRG.20673 Avicennia marina HOM05D000300 ORTHO05D000383 4.7e-06 57.8 185 25.9
Os01g0280400 Oryza sativa ssp. japonica HOM05D002649 ORTHO05D002838 4.7e-06 57.8 211 25.1
Os12g0170100 Oryza sativa ssp. japonica HOM05D002649 ORTHO05D002838 6.2e-06 57.4 211 25.1
unitig_750.g28409 Utricularia gibba HOM05D000976 ORTHO05D000383 6.2e-06 57.4 173 24.3


User provided reference genes

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