Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 0.0e+00 1388.6 686 100.0
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 0.0e+00 1117.4 709 79.0
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 0.0e+00 1091.6 709 77.2
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 0.0e+00 1077.4 750 74.4
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 5.9e-273 944.1 716 66.1
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 2.2e-272 942.2 716 65.5
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 2.9e-272 941.8 715 65.6
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 8.0e-270 933.7 713 65.4
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.0e-269 933.3 715 65.3
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 1.2e-268 929.9 711 65.0
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 2.0e-268 929.1 716 64.0
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.1e-266 923.3 716 64.7
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.4e-266 922.9 712 64.7
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 3.1e-266 921.8 712 64.6
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 5.9e-265 917.5 711 64.0
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.3e-264 915.6 713 64.5
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 6.6e-264 914.1 716 63.8
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.1e-263 913.3 716 64.0
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.5e-263 912.9 712 63.6
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 2.5e-263 912.1 712 63.1
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 7.3e-263 910.6 710 63.9
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 9.5e-263 910.2 715 63.2
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 3.6e-262 908.3 715 63.9
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.4e-261 906.4 710 63.9
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 8.9e-261 903.7 732 61.9
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 1.2e-260 903.3 717 62.9
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.2e-260 903.3 714 62.6
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.0e-260 902.5 710 63.1
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 5.7e-260 901.0 714 63.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 1.7e-259 899.4 711 62.0
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 4.9e-259 897.9 712 62.8
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 4.9e-259 897.9 724 62.4
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.4e-258 896.3 714 63.0
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 7.0e-258 894.0 748 60.4
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 7.0e-258 894.0 713 63.0
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 2.0e-257 892.5 714 63.4
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 7.8e-257 890.6 714 62.6
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 3.9e-256 888.3 763 59.2
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 5.0e-256 887.9 716 61.9
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 4.3e-255 884.8 713 62.3
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 7.3e-255 884.0 715 61.7
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.4e-253 879.8 706 61.8
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.8e-253 879.4 717 61.2
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 1.8e-253 879.4 705 62.0
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.3e-253 879.0 713 61.7
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 4.0e-253 878.2 713 61.2
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 4.0e-253 878.2 717 62.3
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.2e-253 877.9 881 58.0
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.2e-252 876.7 715 62.8
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 4.4e-252 874.8 719 61.6
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 4.4e-252 874.8 716 60.8
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 1.3e-251 873.2 713 61.3
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.2e-251 872.5 697 62.4
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.6e-249 866.3 697 62.1
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 3.5e-249 865.1 557 77.7
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 3.5e-249 865.1 723 60.9
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.3e-248 862.4 716 59.9
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 3.0e-248 862.1 717 59.8
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 5.6e-247 857.8 762 58.4
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 9.5e-247 857.1 744 58.9
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.6e-246 856.3 713 61.4
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.6e-246 856.3 718 59.9
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.6e-246 856.3 723 61.3
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 4.7e-246 854.7 719 60.2
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 2.3e-245 852.4 716 60.3
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 7.5e-244 847.4 724 59.0
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 7.5e-244 847.4 724 59.0
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 7.5e-244 847.4 724 59.0
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-243 846.3 723 60.7
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 8.3e-243 844.0 719 59.7
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 2.1e-241 839.3 721 59.1
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 2.7e-241 839.0 724 58.4
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 2.7e-241 839.0 724 58.4
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 3.5e-241 838.6 717 58.0
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 1.0e-240 837.0 716 58.5
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.3e-240 835.9 724 58.6
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 5.6e-239 831.2 685 60.4
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 7.3e-239 830.9 724 58.4
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-238 830.1 723 59.8
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 2.8e-238 828.9 714 58.3
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 2.8e-238 828.9 775 56.8
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.8e-237 826.2 718 57.9
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 1.3e-235 820.1 719 57.0
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 1.7e-235 819.7 718 58.1
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 4.9e-235 818.1 728 58.7
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 3.5e-233 812.0 719 56.7
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 4.6e-233 811.6 708 59.0
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 6.0e-233 811.2 717 57.0
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 1.0e-232 810.4 719 57.3
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.3e-232 810.1 706 58.5
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.7e-232 809.7 721 57.7
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 3.0e-232 808.9 728 57.7
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 6.6e-232 807.7 746 55.0
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 8.6e-232 807.4 719 57.0
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 1.9e-231 806.2 717 56.9
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.2e-230 803.5 714 56.6
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 2.8e-230 802.4 718 57.0
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 4.0e-229 798.5 712 58.4
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 6.9e-221 771.2 727 56.5
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 9.9e-220 767.3 662 58.6
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.8e-216 756.5 714 55.2
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.1e-215 753.8 956 45.6
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 4.0e-213 745.3 590 64.2
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 5.3e-213 745.0 612 60.9
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 2.7e-209 732.6 719 53.3
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 1.4e-202 710.3 681 54.6
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 6.0e-201 704.9 493 73.6
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.8e-200 703.4 479 75.6
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.6e-196 689.5 481 74.4
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.4e-196 689.1 564 60.6
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 4.2e-178 629.0 511 61.3
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.6e-172 609.8 706 43.9
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.7e-167 591.3 687 43.8
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 1.6e-164 583.9 732 43.7
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.6e-164 583.9 724 44.1
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 2.5e-162 576.6 691 43.8
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 7.0e-157 558.5 578 53.6
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 1.7e-155 553.9 496 58.5
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 1.9e-154 550.4 409 61.4
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.2e-152 542.3 487 58.3
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.9e-138 497.3 666 41.1
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 4.3e-138 496.1 709 37.5
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 1.4e-136 491.1 391 60.6
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 8.3e-134 481.9 659 40.8
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 9.5e-130 468.4 336 73.2
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 5.2e-128 462.6 382 63.1
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 8.3e-126 455.3 357 61.3
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 3.2e-125 453.4 630 39.5
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 5.6e-122 442.6 328 64.0
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 1.4e-117 427.9 428 56.1
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 4.1e-117 426.4 339 61.1
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 6.6e-115 419.1 303 69.3
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 6.6e-107 392.5 238 80.3
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.2e-101 373.2 437 45.3
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.2e-100 371.7 228 80.7
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.6e-100 371.3 359 57.4
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 1.6e-100 371.3 359 57.4
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 4.5e-95 353.2 218 78.4
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 5.8e-95 352.8 557 38.8
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.9e-95 352.1 421 44.7
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 7.1e-93 345.9 420 44.0
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.0e-91 342.0 420 43.8
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.8e-91 341.3 413 44.6
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.4e-88 331.6 308 57.1
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 4.1e-80 303.5 244 59.8
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 9.0e-80 302.4 265 54.0
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 2.4e-64 251.1 183 64.5
HPP92_010182 Vanilla planifolia HOM05D003203 ORTHO05D003526 2.3e-59 234.6 185 61.6
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 1.8e-56 224.9 195 61.0
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 2.6e-55 221.1 197 57.4
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 1.0e-54 219.2 179 60.3
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.7e-54 218.4 215 55.3
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 4.7e-52 210.3 273 43.6
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 2.3e-51 208.0 193 58.5
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 1.2e-50 205.7 184 53.3
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-49 201.8 186 55.9
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.1e-48 197.6 187 51.3
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.9e-47 193.4 159 57.9
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 9.4e-45 186.0 162 58.6
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.6e-44 185.3 162 58.0
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 3.6e-44 184.1 153 60.1
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 1.5e-42 178.7 163 57.1
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 1.8e-40 171.8 130 61.5
Dinv24671 Davidia involucrata HOM05D003203 ORTHO05D003526 5.4e-40 170.2 136 58.8
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 4.5e-39 167.2 321 33.3
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 1.2e-36 159.1 114 62.3
Lj2A1035T52 Lonicera japonica HOM05D003203 ORTHO05D003526 2.8e-33 147.9 95 73.7
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 1.6e-31 142.1 132 51.5
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.2e-28 132.5 116 51.7
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 8.9e-27 126.3 128 54.7
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.5e-26 125.6 168 42.9
Cc04_g16280 Coffea canephora HOM05D003203 ORTHO05D003526 1.9e-24 118.6 137 46.7
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.6e-20 105.5 100 54.0
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.0e-14 86.3 68 58.8
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.3e-14 85.9 89 56.2
TPR.G38645 Trifolium pratense HOM05D003203 ORTHO05D003526 1.3e-14 85.9 73 53.4
COL.COLO4_02731 Corchorus olitorius HOM05D003203 ORTHO05D003526 5.1e-14 84.0 53 64.2
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.1e-13 82.8 89 55.1
TPR.G22000 Trifolium pratense HOM05D003203 ORTHO05D003526 1.3e-09 69.3 62 51.6
CAN.G1442.2 Capsicum annuum HOM05D000847 ORTHO05D003526 6.4e-09 67.0 96 44.8
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.4e-08 65.9 80 52.5
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 7.1e-08 63.5 89 43.8
QL11p006401 Quercus lobata HOM05D003203 ORTHO05D003526 6.6e-06 57.0 46 60.9


User provided reference genes

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