Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.0e-100 370.2 197 100.0
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 8.0e-98 360.5 197 95.4
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 2.3e-89 332.4 198 88.9
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 8.9e-89 330.5 198 87.9
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 9.8e-88 327.0 198 87.4
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 1.6e-77 293.1 208 77.9
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 6.4e-63 244.6 215 61.9
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 4.3e-59 231.9 195 68.2
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 3.9e-52 208.8 220 52.7
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 4.8e-50 201.8 207 55.1
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 6.2e-50 201.4 205 54.1
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.4e-48 195.7 208 57.2
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.4e-48 195.7 216 54.6
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.4e-48 195.7 203 53.7
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 5.8e-48 194.9 208 55.8
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 1.0e-47 194.1 205 52.7
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.0e-47 194.1 203 56.2
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.9e-47 192.6 207 56.0
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 4.9e-47 191.8 204 54.4
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 4.2e-46 188.7 202 60.4
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 4.2e-46 188.7 202 60.4
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 4.2e-46 188.7 207 54.6
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 9.3e-46 187.6 209 54.5
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 9.3e-46 187.6 209 54.5
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 9.3e-46 187.6 210 55.7
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 1.6e-45 186.8 207 55.6
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 1.6e-45 186.8 210 52.4
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 2.7e-45 186.0 207 54.1
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 2.7e-45 186.0 205 55.1
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 6.0e-45 184.9 208 51.9
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 6.0e-45 184.9 206 54.9
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 8.7e-44 181.0 221 52.0
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 3.3e-43 179.1 215 52.1
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 3.3e-43 179.1 167 61.1
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 4.3e-43 178.7 208 50.5
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 7.4e-43 177.9 208 56.2
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 9.6e-43 177.6 185 53.0
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 1.6e-42 176.8 207 52.2
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.1e-42 176.4 207 52.7
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.8e-42 176.0 209 51.7
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 2.8e-42 176.0 219 52.5
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.8e-42 176.0 204 52.9
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 6.2e-42 174.9 210 53.8
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 6.2e-42 174.9 207 53.1
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 8.2e-42 174.5 198 53.0
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.1e-41 174.1 207 51.2
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 5.3e-41 171.8 205 50.7
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 5.3e-41 171.8 166 59.6
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 9.0e-41 171.0 222 50.9
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 9.0e-41 171.0 211 54.0
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 9.0e-41 171.0 196 51.0
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.5e-40 170.2 201 52.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.6e-40 169.5 209 51.2
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 5.8e-40 168.3 194 53.6
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 7.6e-40 167.9 209 50.2
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 7.6e-40 167.9 209 49.8
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 7.6e-40 167.9 209 51.2
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.0e-39 167.5 208 52.9
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.0e-39 167.5 207 50.7
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.0e-39 167.5 207 50.7
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.3e-39 167.2 227 52.0
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 2.2e-39 166.4 204 55.4
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 3.8e-39 165.6 207 50.7
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 3.8e-39 165.6 124 67.7
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 6.5e-39 164.9 208 50.0
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 6.5e-39 164.9 208 50.0
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 1.1e-38 164.1 209 51.2
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.4e-38 163.7 217 49.3
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 4.2e-38 162.2 209 49.3
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.2e-38 162.2 142 64.8
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 4.2e-38 162.2 227 47.6
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 7.1e-38 161.4 210 50.0
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.6e-37 160.2 258 43.8
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 4.6e-37 158.7 81 90.1
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 6.1e-37 158.3 205 50.7
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.8e-36 156.8 207 48.8
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 2.3e-36 156.4 214 49.5
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 3.0e-36 156.0 207 53.1
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 3.0e-36 156.0 180 55.6
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 6.7e-36 154.8 205 47.8
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 8.7e-36 154.5 208 51.4
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 8.7e-36 154.5 203 52.7
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 8.7e-36 154.5 197 52.8
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 8.7e-36 154.5 197 52.8
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 1.1e-35 154.1 121 66.1
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.5e-35 152.9 203 52.2
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 4.3e-35 152.1 192 52.1
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 5.7e-35 151.8 211 48.8
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 5.7e-35 151.8 229 45.0
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 7.4e-35 151.4 206 50.5
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 7.4e-35 151.4 135 61.5
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 9.7e-35 151.0 140 60.0
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 1.3e-34 150.6 181 50.3
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 3.7e-34 149.1 198 50.0
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 4.8e-34 148.7 160 53.8
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 6.3e-34 148.3 188 47.3
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 8.2e-34 147.9 208 51.0
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 5.3e-33 145.2 116 66.4
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 6.9e-33 144.8 199 53.3
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 1.2e-32 144.1 120 66.7
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.0e-31 141.0 114 64.9
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 2.2e-31 139.8 120 65.8
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 2.2e-31 139.8 120 65.8
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 5.0e-31 138.7 117 63.2
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 5.0e-31 138.7 117 63.2
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 8.5e-31 137.9 147 57.8
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 8.5e-31 137.9 98 68.4
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 8.5e-31 137.9 98 68.4
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 8.5e-31 137.9 230 43.5
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 8.5e-31 137.9 209 49.3
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 1.4e-30 137.1 200 48.0
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 2.5e-30 136.3 117 64.1
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 2.5e-30 136.3 203 49.8
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 4.2e-30 135.6 202 47.0
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 7.2e-30 134.8 111 64.9
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 7.2e-30 134.8 184 48.9
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 7.2e-30 134.8 190 44.7
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 7.2e-30 134.8 187 45.5
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.4e-30 134.4 191 49.7
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 9.4e-30 134.4 206 48.1
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.2e-29 134.0 244 42.6
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-29 133.7 111 64.0
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.6e-29 132.5 114 64.0
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 7.9e-29 131.3 201 49.3
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 1.8e-28 130.2 177 49.2
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 1.8e-28 130.2 189 47.1
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 3.9e-28 129.0 184 44.6
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 5.1e-28 128.6 205 49.3
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 5.1e-28 128.6 143 51.7
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 8.8e-28 127.9 202 42.6
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-27 127.5 176 51.1
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-27 127.5 176 51.1
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 1.5e-27 127.1 123 62.6
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-27 126.7 202 48.0
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 2.0e-27 126.7 202 48.0
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.0e-27 126.7 190 46.3
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.5e-27 126.3 187 47.1
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 3.3e-27 125.9 226 42.0
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.3e-27 125.6 209 44.5
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.3e-27 125.6 209 44.5
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 9.7e-27 124.4 207 42.0
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 1.7e-26 123.6 203 48.8
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 2.2e-26 123.2 109 63.3
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.8e-26 122.9 181 47.0
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.8e-26 122.9 183 48.1
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 3.7e-26 122.5 216 43.5
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 4.8e-26 122.1 115 60.9
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 6.3e-26 121.7 197 42.6
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 8.2e-26 121.3 204 41.2
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.1e-25 120.9 87 70.1
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.4e-25 120.6 200 48.5
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.8e-25 120.2 59 91.5
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 3.1e-25 119.4 114 53.5
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 3.1e-25 119.4 195 43.6
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 5.3e-25 118.6 188 45.7
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.6e-24 116.3 114 58.8
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.7e-23 113.6 113 58.4
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.7e-23 113.6 204 47.1
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 5.5e-22 108.6 72 66.7
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.6e-21 107.1 195 43.1
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 3.6e-21 105.9 72 68.1
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.7e-21 105.5 56 83.9
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.3e-20 103.2 203 38.4
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.9e-20 102.4 186 43.5
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.5e-19 100.5 196 38.3
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.1e-17 94.4 180 43.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 1.4e-17 94.0 197 41.6
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 9.1e-17 91.3 152 45.4
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 5.9e-16 88.6 168 41.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.0e-15 87.8 188 44.7
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 2.9e-15 86.3 117 42.7
CAN.G2490.1 Capsicum annuum HOM05D003686 ORTHO05D004322 1.9e-14 83.6 110 54.5
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 5.5e-14 82.0 194 35.1
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 9.4e-14 81.3 41 80.5
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 1.2e-13 80.9 194 35.1
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 8.0e-13 78.2 81 55.6
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 6.7e-12 75.1 115 40.9
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 5.9e-08 62.0 59 54.2
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 1.3e-07 60.8 41 63.4


User provided reference genes

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