Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 5.7e-206 720.7 369 100.0
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 8.3e-173 610.5 387 83.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 4.8e-152 541.6 388 75.3
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 3.1e-151 538.9 386 74.6
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.0e-130 470.7 355 73.0
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.4e-127 460.3 383 68.1
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 7.9e-115 417.9 355 65.9
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 4.5e-110 402.1 375 61.3
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 1.4e-106 390.6 350 62.3
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 2.0e-105 386.7 393 58.5
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.1e-103 379.4 371 60.1
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 5.3e-103 378.6 382 56.8
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 9.1e-103 377.9 374 58.8
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 9.1e-103 377.9 421 53.4
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 7.7e-102 374.8 369 59.3
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.9e-101 372.9 378 57.9
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 3.2e-100 369.4 372 56.5
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 4.2e-100 369.0 373 57.1
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 1.6e-99 367.1 379 55.9
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 2.7e-99 366.3 359 56.3
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 3.6e-99 365.9 367 56.7
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.4e-98 364.0 406 53.0
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.4e-98 364.0 386 54.9
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 2.3e-98 363.2 340 60.9
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.6e-97 359.8 364 56.9
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 4.4e-97 359.0 524 46.0
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 9.1e-95 351.3 363 57.0
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.7e-94 349.7 369 56.9
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 3.5e-94 349.4 363 57.3
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.2e-93 346.7 373 54.7
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 3.8e-93 345.9 375 54.4
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 3.8e-93 345.9 350 56.6
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 2.5e-92 343.2 375 52.5
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 3.2e-92 342.8 363 55.6
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 4.2e-92 342.4 400 52.5
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 5.5e-92 342.0 355 55.5
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 7.2e-92 341.7 355 55.5
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.6e-91 340.5 362 55.8
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.6e-91 340.5 297 62.6
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 2.1e-91 340.1 378 54.8
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 2.1e-91 340.1 332 58.4
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 6.1e-91 338.6 374 52.9
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.8e-90 337.0 372 53.8
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 4.0e-90 335.9 369 54.2
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.2e-89 334.3 262 66.4
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 9.8e-89 331.3 383 53.5
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 1.7e-88 330.5 250 69.2
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 3.7e-88 329.3 372 51.9
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.1e-87 327.8 257 67.3
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.8e-87 327.0 366 54.9
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 1.8e-87 327.0 379 53.6
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.4e-87 326.6 379 51.2
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.4e-87 326.6 371 52.8
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 2.4e-87 326.6 347 56.2
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 3.1e-87 326.2 371 53.4
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 3.1e-87 326.2 370 53.8
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.6e-86 323.9 316 59.5
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 3.5e-86 322.8 296 60.1
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 7.7e-86 321.6 353 53.5
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.0e-85 321.2 332 56.0
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.3e-85 320.1 366 51.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.9e-85 319.7 365 51.2
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 6.6e-85 318.5 376 50.8
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 6.6e-85 318.5 366 53.8
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 6.6e-85 318.5 353 52.7
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.1e-84 317.8 387 51.2
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.5e-84 316.6 408 49.3
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 4.2e-84 315.8 364 51.6
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 5.5e-84 315.5 393 49.4
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 7.2e-84 315.1 335 53.7
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 9.5e-84 314.7 288 58.7
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.2e-83 314.3 387 50.6
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.6e-83 313.9 304 58.6
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 2.8e-83 313.2 384 49.5
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.8e-83 313.2 349 52.4
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 3.6e-83 312.8 396 48.5
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 5.2e-82 308.9 410 49.0
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 6.8e-82 308.5 368 51.1
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 8.9e-82 308.1 388 49.7
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.5e-81 307.4 382 49.0
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 2.6e-81 306.6 394 49.2
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 4.4e-81 305.8 375 48.3
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 5.7e-81 305.4 366 51.1
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 2.8e-80 303.1 347 51.3
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 3.7e-80 302.8 334 53.0
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 4.9e-80 302.4 382 50.3
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 6.3e-80 302.0 391 47.8
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 8.3e-80 301.6 342 49.7
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.8e-79 300.4 361 49.0
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.2e-78 297.7 387 49.9
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.6e-78 297.4 366 50.0
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.7e-78 296.6 367 48.8
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 5.9e-78 295.4 367 47.7
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 5.9e-78 295.4 382 49.0
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.0e-77 294.7 364 50.0
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.3e-77 294.3 301 53.5
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 3.9e-77 292.7 368 48.1
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 6.6e-77 292.0 297 56.9
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 8.0e-75 285.0 252 58.3
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.2e-73 281.2 383 46.0
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 1.1e-71 274.6 245 58.0
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.9e-71 273.9 323 51.1
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 2.4e-71 273.5 248 58.1
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 2.4e-71 273.5 257 58.0
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 7.0e-71 271.9 337 48.7
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 9.2e-71 271.6 399 44.4
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.0e-70 270.4 174 81.0
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.7e-69 267.3 299 51.5
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.5e-68 263.5 323 47.7
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.2e-67 261.2 288 52.4
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 2.3e-66 256.9 245 57.6
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.8e-66 255.4 246 56.1
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.5e-65 254.2 264 56.8
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 1.5e-65 254.2 203 65.5
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 3.4e-65 253.1 266 59.0
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 6.4e-64 248.8 253 54.2
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.2e-62 244.6 266 49.2
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 2.7e-62 243.4 233 55.4
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 5.1e-61 239.2 251 50.6
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 6.6e-61 238.8 180 68.3
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 4.7e-59 232.6 242 52.5
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 6.2e-59 232.3 180 66.7
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 3.1e-58 229.9 192 60.9
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 7.6e-57 225.3 332 45.5
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 2.9e-56 223.4 168 67.3
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 8.3e-56 221.9 260 49.2
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.3e-53 213.8 183 59.6
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.1e-52 211.5 178 59.6
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 3.5e-46 189.9 207 50.2
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 2.8e-43 180.3 236 41.1
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.6e-38 164.5 131 61.8
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 1.8e-34 151.0 246 37.8
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 3.1e-34 150.2 333 32.7
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 6.9e-34 149.1 150 55.3
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 4.5e-33 146.4 235 40.9
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 5.8e-33 146.0 113 64.6
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 5.4e-31 139.4 69 94.2
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 2.7e-30 137.1 255 40.4
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 8.7e-29 132.1 220 38.2
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 2.4e-26 124.0 110 60.9
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 1.5e-25 121.3 68 79.4
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.4e-25 120.2 200 43.5
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 5.8e-25 119.4 69 76.8
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 1.9e-23 114.4 70 77.1
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.1e-23 112.5 114 51.8
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 1.2e-22 111.7 156 48.1
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 8.7e-21 105.5 289 33.2
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.9e-18 95.9 57 82.5
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.2e-17 95.1 50 84.0
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 1.2e-17 95.1 98 54.1
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 4.5e-17 93.2 65 64.6
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 2.2e-16 90.9 116 44.8
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.6e-14 83.2 46 76.1
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 8.7e-13 79.0 153 39.2
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 1.3e-11 75.1 64 57.8
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 6.9e-10 69.3 36 86.1
Sabra07G0103800 Salix brachista HOM05D004358 ORTHO05D004960 2.2e-08 64.3 93 47.3
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 7.2e-07 59.3 35 74.3
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.7e-06 57.4 190 25.3
Thecc.04G185600 Theobroma cacao HOM05D004358 ORTHO05D004960 2.7e-06 57.4 32 84.4
vmacro09566 Vaccinium macrocarpon HOM05D000222 ORTHO05D051539 4.6e-06 56.6 32 84.4


User provided reference genes

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