Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 3.4e-189 664.8 336 100.0
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 9.3e-179 630.2 341 93.5
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 2.0e-149 532.7 344 80.2
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.7e-149 530.8 315 85.7
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 4.1e-142 508.4 316 82.3
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 2.1e-138 496.1 318 79.9
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 9.8e-104 380.9 343 61.2
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 8.3e-103 377.9 388 55.9
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 1.6e-101 373.6 381 56.4
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.9e-100 369.0 383 56.4
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 9.5e-99 364.4 341 58.7
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 3.6e-98 362.5 347 57.3
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.6e-98 362.5 342 58.5
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 3.1e-97 359.4 361 56.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 5.8e-96 355.1 350 56.0
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 8.3e-95 351.3 353 53.8
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 1.1e-94 350.9 384 53.6
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 3.2e-94 349.4 329 58.4
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 4.1e-94 349.0 326 58.9
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 7.0e-94 348.2 363 54.5
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.2e-93 347.4 345 57.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 2.7e-93 346.3 368 54.3
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 4.6e-93 345.5 327 56.3
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 3.0e-92 342.8 344 56.7
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 3.0e-92 342.8 343 55.4
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 3.0e-92 342.8 363 52.3
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 5.0e-92 342.0 383 51.4
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.3e-91 339.3 328 57.0
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 5.6e-91 338.6 328 57.0
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 5.6e-91 338.6 193 85.0
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.2e-90 337.4 284 61.3
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.6e-90 337.0 352 54.5
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 3.6e-90 335.9 342 55.6
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 4.7e-90 335.5 312 57.7
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 6.2e-90 335.1 353 52.7
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.8e-89 333.6 333 54.4
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 3.1e-89 332.8 341 54.5
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 6.8e-89 331.6 325 54.2
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 8.9e-89 331.3 309 58.3
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.2e-88 330.9 355 50.4
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 2.0e-88 330.1 307 56.7
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 3.4e-88 329.3 335 53.4
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 3.4e-88 329.3 329 54.4
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.4e-88 329.3 316 55.4
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 7.5e-88 328.2 247 66.0
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 7.5e-88 328.2 344 53.8
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 9.8e-88 327.8 311 56.6
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 1.3e-87 327.4 329 53.5
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.7e-87 327.0 319 54.5
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.2e-87 326.6 256 64.1
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.2e-87 326.6 253 62.8
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 3.7e-87 325.9 320 55.0
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 4.9e-87 325.5 319 55.8
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.4e-86 323.9 352 52.0
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.4e-86 323.9 315 55.6
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.4e-86 323.9 326 54.6
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 1.9e-86 323.6 246 65.0
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.9e-86 323.6 380 50.5
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 3.2e-86 322.8 345 51.9
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 4.1e-86 322.4 330 54.5
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 5.4e-86 322.0 354 50.8
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 5.4e-86 322.0 265 61.9
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 5.4e-86 322.0 289 59.2
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.0e-86 321.6 248 65.3
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 9.2e-86 321.2 346 52.6
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.2e-85 320.9 424 46.5
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 2.7e-85 319.7 331 52.3
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 3.5e-85 319.3 273 62.3
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 4.6e-85 318.9 327 53.8
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 4.6e-85 318.9 320 54.1
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 6.0e-85 318.5 329 52.9
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 7.8e-85 318.2 328 52.4
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 1.7e-84 317.0 303 54.8
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 3.0e-84 316.2 377 49.6
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 3.9e-84 315.8 246 63.4
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 3.9e-84 315.8 246 63.4
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 5.1e-84 315.5 239 64.4
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 8.6e-84 314.7 243 62.6
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 8.6e-84 314.7 235 64.7
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 8.6e-84 314.7 291 58.4
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.1e-83 314.3 265 59.6
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.5e-83 313.9 264 60.6
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 3.3e-83 312.8 253 62.5
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 3.3e-83 312.8 243 63.0
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 5.6e-83 312.0 286 56.3
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 9.5e-83 311.2 308 54.5
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 1.2e-82 310.8 242 63.6
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.6e-82 310.5 328 52.1
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.6e-82 310.5 314 55.7
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.1e-82 310.1 298 55.4
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 2.8e-82 309.7 323 53.3
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 2.8e-82 309.7 295 55.9
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 6.2e-82 308.5 240 64.6
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 8.1e-82 308.1 300 55.7
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.4e-80 302.8 270 59.3
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 3.4e-80 302.8 291 54.3
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 4.4e-80 302.4 322 50.3
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 4.4e-80 302.4 354 50.0
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 5.8e-80 302.0 389 47.6
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 9.9e-80 301.2 239 61.9
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 1.1e-78 297.7 251 59.0
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.9e-78 297.0 387 49.9
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.4e-78 296.6 299 53.8
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.5e-77 292.7 337 48.1
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.0e-76 291.2 359 48.5
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 1.3e-76 290.8 305 50.8
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 3.0e-76 289.7 357 47.6
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 9.5e-75 284.6 246 58.9
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 4.7e-74 282.3 272 54.4
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.1e-73 281.2 309 50.8
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 1.1e-73 281.2 274 58.0
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.8e-73 280.4 227 61.2
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 1.5e-72 277.3 236 58.9
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 9.9e-72 274.6 217 63.6
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.7e-71 273.9 318 47.2
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 7.1e-70 268.5 185 68.6
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 7.1e-70 268.5 304 50.3
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 9.2e-70 268.1 316 47.2
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 2.7e-69 266.5 209 63.2
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 2.7e-69 266.5 180 71.1
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 1.5e-67 260.8 264 54.5
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.5e-67 260.0 185 67.6
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 1.3e-66 257.7 250 56.0
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 8.1e-66 255.0 251 54.6
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 5.3e-65 252.3 183 65.0
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 1.5e-64 250.8 244 52.0
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.7e-63 247.3 171 68.4
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 8.1e-58 228.4 313 44.4
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.0e-52 211.5 153 75.2
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.0e-47 194.9 134 66.4
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 6.5e-47 192.2 236 44.5
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.6e-45 187.6 139 66.9
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.9e-41 172.2 113 68.1
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 5.0e-39 166.0 304 34.5
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.9e-38 164.1 106 74.5
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 1.3e-36 157.9 264 36.0
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 3.2e-30 136.7 198 39.4
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 7.9e-29 132.1 99 67.7
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 1.0e-28 131.7 110 59.1
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 3.3e-27 126.7 75 70.7
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 4.3e-27 126.3 79 78.5
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 6.5e-23 112.5 105 53.3
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 6.1e-21 105.9 107 57.9
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.5e-19 101.3 144 44.4
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 3.7e-18 96.7 47 95.7
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 1.8e-17 94.4 95 58.9
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 5.9e-16 89.4 57 73.7
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 3.8e-15 86.7 76 57.9
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 6.5e-15 85.9 74 58.1
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 7.2e-14 82.4 100 50.0
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 7.2e-14 82.4 101 42.6
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 4.7e-13 79.7 57 66.7
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 2.0e-11 74.3 156 31.4
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 4.4e-11 73.2 127 41.7
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 1.3e-10 71.6 197 29.9
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.8e-09 67.8 63 52.4
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 4.1e-09 66.6 37 75.7
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 7.0e-09 65.9 184 29.9
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.1e-09 65.5 141 30.5
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.7e-07 61.2 220 25.5
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 5.0e-07 59.7 251 27.1
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 2.5e-06 57.4 136 32.4
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 5.5e-06 56.2 216 26.4
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 9.4e-06 55.5 136 30.9


User provided reference genes

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