Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 5.8e-211 737.3 359 100.0
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 4.0e-188 661.4 352 89.8
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 6.8e-188 660.6 356 89.6
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 2.9e-186 655.2 356 87.6
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.9e-185 652.5 356 87.1
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 3.2e-185 651.7 355 87.6
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 3.2e-185 651.7 354 87.3
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.6e-184 649.4 356 87.1
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.6e-184 649.4 354 87.0
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 2.7e-184 648.7 359 86.6
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 6.0e-184 647.5 345 89.0
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 6.0e-184 647.5 359 87.2
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 7.8e-184 647.1 353 87.3
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.3e-183 645.6 350 88.0
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 1.9e-182 642.5 357 87.4
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 4.3e-182 641.3 344 88.7
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 5.6e-182 641.0 357 87.4
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 9.6e-182 640.2 353 86.7
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 2.1e-181 639.0 357 85.7
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 2.8e-181 638.6 354 85.6
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 2.8e-181 638.6 354 85.6
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 2.8e-181 638.6 354 85.3
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 4.7e-181 637.9 349 87.1
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 6.2e-181 637.5 350 87.1
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 6.2e-181 637.5 354 85.3
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.2e-181 637.5 357 85.7
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 8.1e-181 637.1 357 86.8
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 8.1e-181 637.1 353 86.7
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 8.1e-181 637.1 357 85.4
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.4e-180 636.3 349 87.1
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.4e-180 635.6 352 86.1
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 5.2e-180 634.4 352 87.2
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 9.0e-180 633.6 353 85.8
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 2.0e-179 632.5 358 85.8
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 3.4e-179 631.7 349 86.5
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.4e-179 631.3 358 85.2
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 7.6e-179 630.6 354 85.6
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 1.3e-178 629.8 357 84.9
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 3.8e-178 628.2 368 82.6
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 1.4e-177 626.3 344 87.2
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.2e-176 623.2 408 77.0
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 4.6e-176 621.3 371 82.2
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 7.8e-176 620.5 410 75.6
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 1.3e-175 619.8 357 84.9
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 6.6e-175 617.5 381 80.1
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 5.6e-174 614.4 342 88.0
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 7.3e-174 614.0 335 88.1
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 1.6e-173 612.8 362 83.4
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.1e-173 612.5 347 85.3
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 2.8e-173 612.1 364 82.4
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 4.0e-172 608.2 444 71.2
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 6.9e-172 607.4 382 78.3
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 1.2e-171 606.7 393 77.6
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 2.0e-171 605.9 357 83.8
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.8e-171 604.4 330 88.2
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 7.6e-171 604.0 320 89.1
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 7.6e-171 604.0 350 83.7
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.2e-170 602.4 345 84.6
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.2e-170 602.4 345 84.6
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.8e-170 601.7 350 82.9
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 3.8e-170 601.7 349 82.5
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 6.4e-170 600.9 344 84.3
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 6.4e-170 600.9 368 81.2
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.4e-169 599.7 377 79.6
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.4e-169 599.0 362 80.7
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 4.2e-169 598.2 352 82.7
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.0e-167 593.6 349 82.5
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 2.3e-167 592.4 352 82.4
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 2.3e-167 592.4 359 81.3
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 3.0e-167 592.0 356 80.6
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 3.9e-167 591.7 352 80.1
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 4.3e-166 588.2 359 81.1
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 8.1e-165 583.9 359 81.9
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.8e-164 582.8 377 77.5
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.3e-162 576.6 398 73.4
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 7.9e-160 567.4 355 78.9
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.0e-159 567.0 326 83.7
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 3.0e-159 565.5 352 79.8
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 4.8e-157 558.1 311 85.9
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 1.4e-156 556.6 320 85.0
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 3.4e-155 552.0 369 75.9
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 4.5e-155 551.6 345 75.7
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.5e-153 544.7 358 77.1
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 9.3e-153 543.9 336 75.3
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 1.0e-151 540.4 315 79.7
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.9e-150 536.2 329 80.2
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 3.4e-147 525.4 350 75.7
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 1.7e-146 523.1 350 75.4
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.1e-145 520.4 387 69.3
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 2.1e-144 516.2 352 74.1
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 2.1e-144 516.2 367 71.1
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.4e-143 513.5 357 73.9
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.5e-142 510.0 352 71.6
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.1e-140 503.8 358 72.9
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 4.1e-140 501.9 319 72.7
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 2.8e-133 479.2 310 71.6
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 4.5e-131 471.9 292 80.1
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 7.2e-129 464.5 259 84.6
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 1.1e-124 450.7 325 64.9
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.8e-124 449.9 363 65.0
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 4.5e-123 445.3 321 70.1
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.2e-122 443.0 238 89.1
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 4.0e-119 432.2 353 66.0
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 3.1e-116 422.5 324 63.6
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 9.1e-116 421.0 228 89.0
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 9.1e-116 421.0 228 89.0
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 2.2e-114 416.4 240 84.2
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.9e-114 416.0 349 63.0
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 3.2e-113 412.5 223 87.4
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 5.5e-113 411.8 217 89.9
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 1.2e-112 410.6 321 66.7
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.0e-110 403.3 213 90.1
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 4.4e-110 402.1 225 85.3
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-109 400.2 225 86.7
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.5e-102 377.1 230 80.9
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 5.7e-102 375.2 439 47.6
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 3.0e-82 309.7 223 70.9
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.3e-69 267.7 202 68.3
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 1.1e-65 254.6 211 63.0
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 3.3e-65 253.1 353 44.5
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.3e-58 231.1 129 85.3
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 1.1e-57 228.0 267 50.6
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 7.6e-54 215.3 114 87.7
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 3.0e-50 203.4 117 81.2
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 7.6e-46 188.7 101 88.1
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 2.9e-45 186.8 122 71.3
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 7.4e-41 172.2 94 83.0
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 1.6e-35 154.5 83 86.7
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.5e-33 147.1 120 63.3
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.7e-27 127.1 70 88.6
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.3e-26 124.0 95 66.3
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.0e-22 110.9 77 70.1
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 4.7e-19 99.8 69 65.2
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.6e-17 94.0 57 75.4
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 2.6e-17 94.0 74 60.8
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 3.1e-15 87.0 60 70.0
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 3.8e-13 80.1 77 55.8
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 1.6e-11 74.7 93 48.4
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 1.6e-11 74.7 54 68.5
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 7.4e-09 65.9 31 90.3
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 1.3e-08 65.1 44 70.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.8e-08 63.9 34 73.5
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 1.1e-07 62.0 38 76.3
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 1.1e-07 62.0 38 76.3
PRCOL_00007051 Prasinoderma coloniale HOM05D002604 ORTHO05D003070 3.5e-06 57.0 188 25.5


User provided reference genes

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