Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 0.0e+00 1531.2 763 100.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 0.0e+00 1084.3 782 70.3
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.8e-287 991.9 791 65.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.8e-278 962.6 774 62.1
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 4.0e-278 961.4 795 61.9
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.3e-276 956.4 741 63.4
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.6e-269 932.2 753 61.6
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.3e-268 929.9 753 61.5
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 2.2e-268 929.1 732 62.0
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.9e-267 926.0 741 61.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 2.4e-267 925.6 761 59.0
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.6e-266 922.9 752 61.2
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 1.0e-265 920.2 748 60.6
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 1.0e-265 920.2 743 59.8
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 1.3e-265 919.8 744 60.3
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 9.5e-264 913.7 748 60.3
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 1.8e-262 909.4 762 59.4
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 5.2e-262 907.9 767 58.3
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 1.2e-261 906.7 761 58.2
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 2.0e-261 906.0 775 58.7
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.0e-261 906.0 758 58.8
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 2.6e-261 905.6 764 58.5
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.4e-259 899.0 723 59.9
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 3.2e-259 898.7 779 57.9
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 7.1e-259 897.5 759 58.9
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 2.7e-258 895.6 687 62.2
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 1.0e-257 893.6 764 58.1
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 5.1e-257 891.3 750 58.3
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 6.6e-257 891.0 703 60.9
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.6e-255 886.3 761 59.4
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.1e-255 885.9 709 59.4
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.7e-255 884.8 723 58.9
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.2e-253 880.2 709 59.1
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.6e-253 879.0 792 56.4
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 2.9e-252 875.5 778 55.4
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 3.8e-252 875.2 749 56.6
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.8e-252 875.2 750 58.1
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 3.8e-252 875.2 750 58.1
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 6.4e-252 874.4 762 57.0
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 2.4e-251 872.5 750 57.9
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.2e-251 871.7 775 56.1
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 2.7e-250 869.0 713 58.3
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 4.6e-250 868.2 659 61.6
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 4.6e-250 868.2 743 57.9
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 7.8e-250 867.5 707 59.1
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 7.8e-250 867.5 704 58.2
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.0e-249 867.1 690 60.4
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.0e-249 867.1 708 57.6
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 3.9e-249 865.1 715 58.6
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.5e-248 862.4 739 57.0
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 3.6e-247 858.6 757 56.4
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 4.8e-247 858.2 741 57.2
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 8.1e-247 857.4 735 56.7
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 4.0e-246 855.1 771 56.2
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 2.0e-245 852.8 762 56.7
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.9e-244 848.2 685 61.0
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 4.2e-243 845.1 774 55.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 9.3e-243 844.0 746 57.2
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 8.7e-241 837.4 744 57.3
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 2.5e-240 835.9 760 55.4
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 5.6e-240 834.7 697 57.1
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.8e-238 829.7 775 53.7
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.2e-237 827.0 708 55.9
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 1.2e-237 827.0 743 54.5
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 7.6e-237 824.3 758 55.0
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 9.9e-237 823.9 755 54.7
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 1.1e-235 820.5 687 56.5
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 7.1e-235 817.8 686 56.0
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.9e-233 812.0 772 53.2
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 6.7e-233 811.2 679 58.2
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 4.3e-232 808.5 648 60.3
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 2.8e-231 805.8 752 54.1
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 1.2e-229 800.4 784 52.2
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.5e-229 800.0 786 51.1
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 2.2e-228 796.2 648 59.7
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 3.8e-228 795.4 778 51.4
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 4.9e-228 795.0 721 53.1
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 7.1e-227 791.2 775 51.4
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 4.6e-226 788.5 713 54.4
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.5e-224 783.5 759 51.3
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 3.3e-224 782.3 747 52.1
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.1e-222 777.3 742 52.2
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.1e-222 777.3 742 52.2
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.1e-222 777.3 742 52.2
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 6.9e-222 774.6 791 50.1
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 9.0e-222 774.2 759 50.7
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 5.5e-219 765.0 660 55.9
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 7.9e-218 761.1 681 54.6
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 8.2e-215 751.1 734 51.5
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.1e-214 749.2 685 53.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 9.0e-214 747.7 670 55.5
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 3.3e-208 729.2 753 48.6
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.8e-206 723.4 615 58.4
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 3.3e-200 702.6 565 60.2
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 2.6e-192 676.4 608 54.3
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.1e-190 669.1 535 60.6
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 5.4e-174 615.5 683 44.8
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.5e-171 607.4 696 45.3
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 4.0e-169 599.4 750 44.3
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.2e-162 575.5 519 54.7
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 3.5e-149 533.1 667 42.6
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 3.2e-142 510.0 384 60.9
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 2.1e-133 480.7 457 52.5
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.4e-118 431.4 541 44.4
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.2e-111 407.5 625 40.2
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 6.1e-101 372.9 440 46.1
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 6.7e-100 369.4 309 60.5
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.4e-97 361.7 705 32.1
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.2e-94 349.4 329 56.2
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 2.6e-83 314.3 321 50.8
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.5e-78 298.5 352 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.0e-75 288.1 646 29.1
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.4e-68 265.4 776 25.6
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 5.7e-67 260.0 659 26.9
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.8e-55 220.7 201 54.2
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 8.0e-53 213.0 703 24.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 3.7e-50 204.1 188 55.9
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.7e-50 204.1 658 25.7
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.8e-44 185.3 175 53.7
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-25 122.9 201 36.3
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.3e-23 115.9 70 65.7
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 7.8e-16 90.1 85 49.4
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 1.0e-15 89.7 61 62.3
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 9.6e-14 83.2 51 68.6
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.8e-12 79.0 52 69.2
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 4.0e-12 77.8 687 18.3
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.2e-11 76.3 587 20.1
Solyc01g057200.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 3.2e-09 68.2 154 28.6
AT4G18840 Arabidopsis thaliana HOM05D000001 ORTHO05D006238 4.2e-09 67.8 171 29.2
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 4.2e-09 67.8 408 19.9
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 7.1e-09 67.0 384 22.7
Aa31LG6G1560 Aethionema arabicum HOM05D000001 ORTHO05D006238 1.2e-08 66.2 173 26.6
Carub.0007s2238 Capsella rubella HOM05D000001 ORTHO05D006238 1.2e-08 66.2 171 29.2
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 1.0e-07 63.2 194 23.2
Thhalv10024877m.g Eutrema salsugineum HOM05D000001 ORTHO05D006238 1.8e-07 62.4 171 27.5
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 3.9e-07 61.2 148 27.0
Gohir.A08G055001 Gossypium hirsutum HOM05D001779 ORTHO05D001753 3.9e-07 61.2 153 28.1
CiPaw.10G110800 Carya illinoinensis HOM05D002785 ORTHO05D003042 5.1e-07 60.8 245 24.1
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 6.7e-07 60.5 145 29.7
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 6.7e-07 60.5 208 26.0
Aa31LG1G9990 Aethionema arabicum HOM05D000300 ORTHO05D000383 1.1e-06 59.7 351 21.7
Gorai.004G066800 Gossypium raimondii HOM05D001779 ORTHO05D001753 1.5e-06 59.3 153 27.5
GSVIVG01017677001 Vitis vinifera HOM05D001779 ORTHO05D001753 1.9e-06 58.9 155 24.5
Atru.chr3.2242 Acer truncatum HOM05D002785 ORTHO05D003042 2.5e-06 58.5 200 24.0
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 2.5e-06 58.5 204 24.5
Gohir.D08G064500 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.5e-06 58.5 153 26.8
BcaC05g29817 Brassica carinata HOM05D001779 ORTHO05D001753 3.3e-06 58.2 153 24.2
C05p60810 Brassica napus HOM05D001779 ORTHO05D001753 3.3e-06 58.2 153 24.2
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 3.3e-06 58.2 200 26.0
BcaNung04864 Brassica carinata HOM05D000001 ORTHO05D006238 4.3e-06 57.8 170 27.1
Eucgr.K02161 Eucalyptus grandis HOM05D001779 ORTHO05D001753 4.3e-06 57.8 204 26.5
A01p10870 Brassica napus HOM05D000001 ORTHO05D006238 5.6e-06 57.4 171 26.3
BraA01t01034Z Brassica rapa HOM05D000001 ORTHO05D006238 5.6e-06 57.4 171 26.3
QL05p064786 Quercus lobata HOM05D002785 ORTHO05D003042 5.6e-06 57.4 218 25.7
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 7.4e-06 57.0 200 24.0
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 9.6e-06 56.6 204 25.0
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 9.6e-06 56.6 202 23.3
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 9.6e-06 56.6 160 26.9
THA.LOC104815560 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 9.6e-06 56.6 221 22.6


User provided reference genes

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