Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.8e-186 656.4 502 100.0
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 2.1e-142 510.0 520 71.3
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 7.0e-138 495.0 544 64.0
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.7e-131 473.8 521 59.9
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.6e-121 440.7 521 59.5
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.0e-120 438.0 522 57.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.9e-120 436.4 523 57.4
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-117 426.4 523 55.3
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.0e-117 426.4 527 59.6
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 4.0e-117 426.0 524 60.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.4e-116 422.5 524 63.5
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.7e-115 419.5 523 54.9
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 2.7e-113 413.3 524 59.4
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 7.2e-111 405.2 518 57.1
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-110 402.9 531 57.4
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 6.3e-107 392.1 520 53.8
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 6.3e-107 392.1 519 61.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.8e-106 390.6 519 54.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-106 390.6 522 55.2
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 5.4e-106 389.0 521 58.2
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.0e-105 387.1 522 55.4
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.7e-105 386.7 517 52.0
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.3e-103 379.8 523 64.8
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 5.6e-103 379.0 519 53.8
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 7.3e-103 378.6 522 55.6
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 9.5e-103 378.3 521 54.7
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 6.1e-102 375.6 525 54.1
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.0e-102 375.2 518 52.9
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.4e-101 374.4 522 59.4
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.1e-101 373.2 516 54.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.1e-101 373.2 514 55.8
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 4.0e-101 372.9 525 63.4
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 6.8e-101 372.1 449 68.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.5e-100 370.9 533 51.0
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.0e-100 370.5 516 56.8
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.9e-99 366.7 560 52.0
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.9e-99 366.7 560 52.0
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.1e-98 364.8 521 53.7
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.9e-98 364.0 530 53.6
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 3.2e-98 363.2 511 54.8
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 7.0e-98 362.1 522 58.0
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.2e-97 361.3 534 50.0
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 4.6e-97 359.4 518 56.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 6.0e-97 359.0 523 62.3
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 7.8e-97 358.6 518 53.3
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 7.8e-97 358.6 518 55.2
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 3.0e-96 356.7 523 54.3
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 5.0e-96 355.9 512 51.0
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 9.5e-95 351.7 527 47.1
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.2e-94 351.3 524 55.3
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 1.6e-94 350.9 516 50.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.6e-94 350.9 517 49.5
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 8.0e-94 348.6 521 57.2
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.4e-93 347.8 558 52.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.3e-93 347.1 529 50.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 6.8e-93 345.5 542 56.8
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 6.8e-93 345.5 529 53.9
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 2.6e-92 343.6 513 55.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 9.8e-92 341.7 526 52.7
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.3e-91 341.3 532 54.1
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.7e-91 340.9 507 46.5
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.2e-91 340.5 510 45.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.9e-91 340.1 527 57.9
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.7e-91 339.7 532 53.8
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.1e-90 338.2 495 61.4
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 9.2e-90 335.1 523 52.0
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 9.2e-90 335.1 520 61.2
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 6.0e-89 332.4 526 53.4
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.7e-88 330.9 528 53.8
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.3e-88 330.5 532 53.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.3e-88 330.5 519 52.6
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 8.6e-88 328.6 526 56.1
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.1e-87 328.2 493 58.0
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.3e-87 326.6 550 51.1
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.6e-86 324.3 361 58.2
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.6e-86 324.3 533 51.4
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.6e-86 324.3 522 60.9
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.8e-86 323.6 514 54.3
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 6.2e-86 322.4 524 50.0
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 8.1e-86 322.0 531 50.7
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 8.1e-86 322.0 523 58.7
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.4e-85 321.2 522 48.3
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.2e-84 318.2 526 52.1
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.2e-84 318.2 465 54.2
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 1.3e-83 314.7 510 53.9
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.1e-82 311.6 521 41.8
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.4e-82 311.2 536 48.9
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-82 310.5 561 46.9
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 3.2e-82 310.1 539 47.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 7.1e-82 308.9 531 52.4
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-81 307.8 528 52.7
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.6e-81 307.8 483 49.1
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.7e-81 307.0 535 43.0
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.5e-81 306.6 523 45.3
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.0e-80 305.1 482 48.8
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 6.6e-80 302.4 193 82.4
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.9e-79 300.8 470 47.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.5e-79 300.4 554 47.1
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 3.6e-78 296.6 512 52.9
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 8.1e-78 295.4 519 49.1
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 8.1e-78 295.4 538 50.6
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.8e-77 294.3 548 40.7
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.4e-74 282.7 526 50.2
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.6e-73 281.2 217 66.8
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.1e-73 280.8 515 41.4
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 3.5e-73 280.0 519 49.7
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 6.0e-73 279.3 525 51.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 7.8e-73 278.9 527 52.0
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 7.8e-73 278.9 527 52.0
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.3e-72 277.3 507 51.9
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 8.7e-72 275.4 532 49.2
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.9e-71 274.2 525 50.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 5.6e-71 272.7 517 53.4
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.2e-70 271.6 521 48.0
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.8e-70 270.4 466 45.3
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 2.4e-69 267.3 443 51.7
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 7.6e-68 262.3 510 50.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 7.6e-68 262.3 208 63.5
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.1e-66 255.8 569 37.4
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.6e-65 254.6 483 52.4
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 3.3e-63 246.9 511 51.9
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 3.3e-63 246.9 511 51.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.1e-61 241.9 340 64.1
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 9.9e-60 235.3 509 34.8
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 2.9e-59 233.8 517 35.8
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.4e-58 230.7 533 40.9
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 5.4e-58 229.6 526 43.5
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-57 227.6 523 35.8
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.6e-54 218.0 519 35.3
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.3e-51 208.4 216 50.0
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.9e-50 204.5 516 37.2
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.7e-48 196.1 513 35.9
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.7e-48 195.7 510 35.9
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.5e-47 194.1 517 34.8
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.5e-47 194.1 510 35.7
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.6e-47 193.0 517 34.8
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.8e-46 190.7 355 43.7
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 5.1e-40 169.9 364 57.7
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.1e-39 168.7 307 45.0
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.5e-39 168.3 394 44.2
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.3e-39 167.2 402 36.6
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 4.3e-39 166.8 441 44.7
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.1e-37 162.2 342 49.7
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 9.4e-34 149.1 363 48.2
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.5e-28 130.2 99 61.6
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-19 101.7 139 43.2
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.5e-18 98.6 227 41.0
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.2e-18 97.4 137 40.1
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.5e-18 96.7 129 43.4
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 6.1e-17 93.2 57 78.9
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.0e-15 88.2 57 75.4
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.8e-14 84.3 181 55.8
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 1.7e-11 75.1 119 42.9
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 2.9e-11 74.3 40 82.5
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 3.2e-10 70.9 78 52.6
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.2e-10 70.9 179 50.8
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 7.2e-10 69.7 78 52.6
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-09 68.9 78 50.0
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.0e-09 66.2 96 39.6
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 2.3e-08 64.7 55 54.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-08 63.2 51 60.8
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-08 63.2 51 60.8
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 8.8e-08 62.8 59 52.5
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 8.8e-08 62.8 54 55.6
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.2e-06 58.2 140 36.4
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.3e-06 56.2 61 52.5


User provided reference genes

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