Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 0.0e+00 1575.5 789 100.0
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 0.0e+00 1318.1 776 85.3
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 0.0e+00 1303.9 758 85.0
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 0.0e+00 1182.5 748 78.7
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1164.8 756 75.8
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 0.0e+00 1152.9 610 94.3
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 0.0e+00 1151.7 764 75.1
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1144.8 768 73.7
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 0.0e+00 1124.0 759 74.2
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 0.0e+00 1113.2 769 71.7
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 8.0e-298 1026.9 700 71.3
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 3.7e-295 1018.1 711 67.5
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 6.3e-295 1017.3 689 68.9
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 8.3e-295 1016.9 719 66.9
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 7.0e-294 1013.8 707 67.5
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 2.0e-293 1012.3 707 67.9
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 2.3e-292 1008.8 706 66.4
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 8.6e-292 1006.9 762 63.6
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 1.6e-290 1002.7 691 68.3
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.8e-290 1001.9 777 62.9
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 5.2e-289 997.7 793 63.6
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.0e-288 995.7 771 63.2
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 1.1e-286 989.9 696 66.4
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 7.0e-286 987.3 789 62.1
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.3e-284 983.0 773 63.6
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 1.2e-282 976.5 704 67.2
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 2.1e-282 975.7 759 62.3
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 4.7e-282 974.5 759 62.3
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 4.7e-282 974.5 759 62.1
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 2.3e-281 972.2 789 61.7
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 2.0e-280 969.1 767 62.6
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 2.6e-280 968.8 692 66.5
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 4.4e-280 968.0 792 60.7
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 4.4e-280 968.0 791 60.4
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 2.9e-279 965.3 712 64.5
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 8.3e-279 963.8 795 60.1
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-278 963.4 657 67.6
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.6e-277 959.5 792 60.6
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.1e-275 953.4 748 61.5
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.2e-274 949.9 750 61.7
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.7e-274 948.0 755 61.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.4e-273 946.4 750 60.9
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 6.8e-273 944.1 758 61.3
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.7e-271 939.5 709 62.8
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 4.1e-270 934.9 768 60.5
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 7.0e-270 934.1 770 59.2
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.3e-268 929.9 755 60.0
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 3.9e-268 928.3 773 59.2
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 5.6e-267 924.5 757 59.8
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 7.3e-267 924.1 780 58.6
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 2.1e-266 922.5 692 63.3
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.5e-264 916.4 765 58.2
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 7.5e-264 914.1 800 56.9
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.4e-262 909.1 772 59.5
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 6.0e-261 904.4 715 62.4
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 3.9e-260 901.7 680 61.8
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.6e-260 901.0 647 66.6
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.8e-257 892.9 793 61.7
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.4e-257 892.5 700 60.4
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 6.8e-257 891.0 702 60.3
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 3.8e-255 885.2 746 58.4
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 6.4e-255 884.4 680 61.2
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.6e-253 879.8 770 57.5
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.6e-253 879.8 680 61.0
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.6e-253 878.2 787 56.5
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 3.0e-252 875.5 757 56.3
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 6.6e-252 874.4 782 56.0
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 3.3e-251 872.1 686 60.3
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 2.1e-250 869.4 703 59.5
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.4e-249 866.7 769 56.2
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.4e-249 865.9 708 57.6
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 1.5e-248 863.2 691 59.9
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 2.0e-248 862.8 700 58.6
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.6e-248 862.4 757 55.5
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 4.4e-248 861.7 759 56.4
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 2.2e-247 859.4 695 57.8
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 2.2e-247 859.4 695 57.8
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 2.2e-247 859.4 695 57.8
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.6e-245 853.2 764 55.6
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 1.0e-244 850.5 697 57.5
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 4.3e-243 845.1 688 59.2
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 7.6e-240 834.3 660 59.5
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 2.8e-234 815.8 773 52.9
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 4.8e-234 815.1 781 51.5
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 3.1e-233 812.4 649 59.3
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.3e-231 807.0 690 56.4
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 3.8e-231 805.4 649 59.2
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.9e-231 805.1 609 63.4
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 1.4e-230 803.5 690 54.8
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.5e-229 798.9 687 55.9
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 1.7e-223 780.0 631 61.2
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.7e-223 780.0 686 55.4
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 5.5e-222 775.0 697 53.7
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 5.5e-222 775.0 773 51.7
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 6.0e-221 771.5 684 53.9
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.9e-214 750.0 638 57.1
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.2e-210 736.5 534 64.8
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 9.4e-198 694.5 800 47.5
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 2.7e-184 649.8 679 48.0
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 1.0e-175 621.3 568 56.5
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 7.5e-171 605.1 646 47.8
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 8.6e-143 511.9 455 55.2
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 7.3e-142 508.8 413 58.6
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.1e-120 437.6 498 46.6
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.7e-114 417.9 595 42.2
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 6.5e-106 389.4 304 65.1
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 2.3e-103 380.9 491 44.2
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.2e-90 337.8 384 52.1
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.8e-90 337.0 667 30.9
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 2.7e-80 304.3 296 51.7
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 5.2e-79 300.1 281 56.6
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 7.0e-76 289.7 650 28.2
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 3.6e-72 277.3 668 27.1
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.6e-67 261.9 664 26.1
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 2.0e-54 218.4 658 24.8
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.9e-50 204.5 119 73.9
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.1e-44 184.1 665 23.6
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.2e-43 182.6 123 67.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 2.5e-41 174.9 159 54.1
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 4.7e-32 144.1 200 40.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.8e-23 115.5 154 45.5
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 1.4e-15 89.4 690 18.8
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.8e-15 89.0 623 19.7
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 9.0e-15 86.7 81 50.6
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 1.7e-13 82.4 50 68.0
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 2.7e-11 75.1 50 62.0
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 7.9e-11 73.6 58 58.6
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 1.9e-09 68.9 344 22.7
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 2.5e-09 68.6 150 28.7
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 4.3e-09 67.8 310 25.2
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 7.3e-09 67.0 172 25.0
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.3e-08 66.2 305 25.6
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 1.6e-08 65.9 328 23.5
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 1.6e-08 65.9 344 22.4
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 3.6e-08 64.7 459 22.7
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 8.1e-08 63.5 385 19.5
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 1.1e-07 63.2 344 23.3
PGSC0003DMG400040010 Solanum tuberosum HOM05D000891 ORTHO05D000761 1.1e-07 63.2 304 24.7
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 1.4e-07 62.8 227 28.2
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 1.4e-07 62.8 311 24.4
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 1.8e-07 62.4 201 25.9
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 3.1e-07 61.6 348 22.7
ECA248G1627 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.0e-07 61.2 353 22.7
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 6.9e-07 60.5 146 27.4
ClCG07G009040 Citrullus lanatus HOM05D000891 ORTHO05D000761 6.9e-07 60.5 272 24.6
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 6.9e-07 60.5 309 22.3
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 6.9e-07 60.5 378 20.4
MELO3C026641.2 Cucumis melo HOM05D000001 ORTHO05D000003 1.5e-06 59.3 287 21.6
SEGI_09142 Sequoiadendron giganteum HOM05D002649 ORTHO05D002838 1.5e-06 59.3 403 21.1
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 2.6e-06 58.5 201 24.9
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 2.6e-06 58.5 244 22.1
Nn2g11881 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.4e-06 58.2 335 21.8
SEGI_25615 Sequoiadendron giganteum HOM05D006258 ORTHO05D007961 3.4e-06 58.2 213 19.7
Ah.06g188870 Amaranthus hybridus HOM05D000001 ORTHO05D004269 4.5e-06 57.8 186 24.2
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 4.5e-06 57.8 198 24.2
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 5.8e-06 57.4 198 25.8
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 5.8e-06 57.4 198 23.7
Gohir.D12G065400 Gossypium hirsutum HOM05D000891 ORTHO05D000761 5.8e-06 57.4 227 25.6
Gorai.008G068700 Gossypium raimondii HOM05D000891 ORTHO05D000761 5.8e-06 57.4 227 25.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 7.6e-06 57.0 281 24.6
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 7.6e-06 57.0 198 24.2
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 7.6e-06 57.0 42 59.5
arahy.Tifrunner.gnm1.ann1.X6Z628 Arachis hypogaea HOM05D001779 ORTHO05D001753 9.9e-06 56.6 199 25.1


User provided reference genes

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