Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 4.4e-142 508.1 277 100.0
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.2e-38 164.5 163 59.5
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 5.9e-38 162.2 289 46.4
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 7.7e-38 161.8 195 53.8
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 1.7e-37 160.6 187 49.7
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 1.7e-37 160.6 175 51.4
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.2e-37 160.2 126 65.9
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 3.8e-37 159.5 187 50.3
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.0e-37 159.1 126 65.9
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.9e-36 157.1 130 66.2
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.5e-36 156.8 201 51.2
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 7.2e-36 155.2 211 50.2
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 9.4e-36 154.8 204 48.0
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 1.2e-35 154.5 112 70.5
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.2e-35 154.5 229 51.1
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 1.6e-35 154.1 165 57.6
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.6e-35 154.1 131 67.2
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 2.7e-35 153.3 178 55.1
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.7e-35 153.3 212 47.2
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 3.6e-35 152.9 242 46.3
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 8.0e-35 151.8 141 61.0
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.0e-34 151.4 198 54.5
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.4e-34 151.0 192 52.1
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 1.4e-34 151.0 144 63.2
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.8e-34 150.6 234 46.6
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.8e-34 150.6 189 55.0
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.8e-34 150.6 123 67.5
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 2.3e-34 150.2 102 75.5
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 4.0e-34 149.4 102 74.5
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.2e-34 149.1 186 54.3
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 8.8e-34 148.3 102 73.5
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 8.8e-34 148.3 211 48.8
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 8.8e-34 148.3 198 53.5
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.2e-33 147.9 127 67.7
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.5e-33 147.5 132 68.9
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.6e-33 146.7 176 48.3
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 3.3e-33 146.4 102 74.5
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 3.3e-33 146.4 128 63.3
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 3.3e-33 146.4 134 61.9
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 4.4e-33 146.0 244 42.6
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 4.4e-33 146.0 121 66.1
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 4.4e-33 146.0 200 50.5
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 5.7e-33 145.6 220 49.5
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 7.5e-33 145.2 250 46.0
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 9.7e-33 144.8 221 48.9
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.3e-32 144.4 128 64.1
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 1.7e-32 144.1 203 50.7
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.7e-32 144.1 126 63.5
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.2e-32 143.7 182 53.3
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 2.2e-32 143.7 122 64.8
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 2.8e-32 143.3 104 71.2
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.8e-32 143.3 126 63.5
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 3.7e-32 142.9 97 75.3
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 3.7e-32 142.9 97 75.3
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.8e-32 142.5 117 66.7
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.8e-32 142.5 117 66.7
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 4.8e-32 142.5 122 64.8
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 6.3e-32 142.1 80 87.5
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 6.3e-32 142.1 186 57.0
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 8.2e-32 141.7 102 72.5
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 8.2e-32 141.7 102 72.5
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-31 141.4 101 71.3
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-31 141.4 101 71.3
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.4e-31 141.0 139 59.7
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.4e-31 141.0 271 42.8
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.4e-31 141.0 133 60.9
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.8e-31 140.6 130 63.1
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.8e-31 140.6 150 56.7
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 2.4e-31 140.2 126 63.5
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 2.4e-31 140.2 106 70.8
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 2.4e-31 140.2 102 71.6
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 2.4e-31 140.2 102 71.6
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 2.4e-31 140.2 196 52.0
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 4.1e-31 139.4 233 48.1
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 5.3e-31 139.0 130 60.0
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 5.3e-31 139.0 97 73.2
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 5.3e-31 139.0 153 51.6
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 9.1e-31 138.3 126 63.5
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 9.1e-31 138.3 102 70.6
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.2e-30 137.9 95 74.7
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.2e-30 137.9 101 70.3
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-30 137.9 197 48.2
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-30 137.9 197 48.2
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.2e-30 137.9 223 44.8
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 1.2e-30 137.9 223 46.6
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 1.6e-30 137.5 212 50.5
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 1.6e-30 137.5 197 51.3
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 3.5e-30 136.3 147 54.4
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.5e-30 136.3 181 50.3
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 4.5e-30 136.0 243 45.3
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 4.5e-30 136.0 211 44.5
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.9e-30 135.6 103 68.0
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 7.7e-30 135.2 221 44.8
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 7.7e-30 135.2 125 60.8
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 7.7e-30 135.2 103 67.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.0e-29 134.8 102 69.6
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.3e-29 134.4 214 46.7
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.9e-29 133.3 195 48.2
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 3.8e-29 132.9 222 45.9
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 5.0e-29 132.5 114 63.2
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 6.5e-29 132.1 245 47.3
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 8.5e-29 131.7 238 44.1
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 8.5e-29 131.7 238 44.1
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 1.1e-28 131.3 195 50.3
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.9e-28 130.6 143 53.8
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.9e-28 130.6 143 53.8
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 1.9e-28 130.6 228 45.2
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 2.5e-28 130.2 142 54.9
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 3.2e-28 129.8 195 49.7
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 3.2e-28 129.8 197 46.7
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.2e-28 129.8 235 42.6
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 4.2e-28 129.4 103 66.0
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.5e-28 129.0 214 46.3
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 5.5e-28 129.0 214 46.3
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 7.2e-28 128.6 207 42.5
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 9.4e-28 128.3 202 46.5
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.2e-27 127.9 190 46.8
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 2.1e-27 127.1 186 50.5
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 3.6e-27 126.3 100 63.0
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 3.6e-27 126.3 100 63.0
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 4.7e-27 125.9 245 42.9
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 4.7e-27 125.9 127 57.5
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 6.1e-27 125.6 241 41.5
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 6.1e-27 125.6 190 46.3
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 8.0e-27 125.2 132 60.6
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 8.0e-27 125.2 64 87.5
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 8.0e-27 125.2 187 47.1
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 8.0e-27 125.2 216 44.0
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.0e-26 124.8 236 42.8
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.4e-26 124.4 136 55.1
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 2.3e-26 123.6 127 59.8
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 3.0e-26 123.2 200 46.0
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 3.0e-26 123.2 139 54.0
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 6.8e-26 122.1 100 69.0
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 6.8e-26 122.1 124 56.5
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.8e-26 122.1 187 47.1
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 6.8e-26 122.1 196 44.9
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 8.8e-26 121.7 238 45.4
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.5e-25 120.9 127 55.1
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.5e-25 120.9 127 55.1
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.5e-25 120.9 195 45.1
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 2.6e-25 120.2 224 45.5
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 3.4e-25 119.8 252 38.1
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 4.4e-25 119.4 212 44.3
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 7.5e-25 118.6 180 47.2
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 7.5e-25 118.6 193 45.6
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 2.8e-24 116.7 138 52.2
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 4.8e-24 115.9 194 47.9
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 6.3e-24 115.5 62 82.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 8.3e-24 115.2 122 51.6
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 4.1e-23 112.8 62 83.9
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.0e-23 112.1 209 43.1
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.6e-22 110.9 217 41.5
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.6e-22 110.9 56 91.1
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 5.0e-21 105.9 213 43.2
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 2.5e-20 103.6 235 40.4
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.1e-19 100.5 226 41.6
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 2.8e-19 100.1 144 45.1
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 3.6e-19 99.8 103 58.3
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 3.6e-19 99.8 103 58.3
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 3.6e-19 99.8 97 66.0
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.8e-18 97.4 180 43.3
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 4.0e-18 96.3 95 62.1
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.8e-18 95.5 180 43.9
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 8.8e-18 95.1 131 46.6
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 4.9e-16 89.4 196 43.9
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.8e-15 87.4 185 41.6
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.6e-14 84.3 102 51.0
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 5.9e-14 82.4 229 34.5
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 1.3e-13 81.3 41 82.9
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 5.0e-13 79.3 190 38.9
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 6.6e-13 79.0 82 54.9
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 1.0e-10 71.6 66 57.6
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 4.9e-08 62.8 41 65.9
CBR_g55163 Chara braunii HOM05D003686 ORTHO05D004322 1.4e-07 61.2 56 58.9
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.8e-07 60.8 209 32.5
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.0e-06 57.4 186 36.0


User provided reference genes

Program Settings