Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 0.0e+00 1640.6 842 100.0
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 0.0e+00 1110.9 844 67.4
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1109.4 850 66.1
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1108.2 807 69.5
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 0.0e+00 1107.0 841 66.9
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 0.0e+00 1104.4 816 67.9
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 0.0e+00 1091.3 845 66.3
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1085.1 847 65.8
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1082.8 787 68.2
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1082.4 813 68.5
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1080.5 799 67.5
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 0.0e+00 1077.0 836 67.2
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.2e-311 1073.2 806 68.0
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 2.8e-309 1065.1 830 64.2
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 4.8e-309 1064.3 746 70.4
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.0e-306 1056.6 748 69.0
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 4.2e-305 1051.2 844 64.1
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 9.4e-305 1050.0 844 64.1
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-304 1049.7 659 75.0
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 5.2e-303 1044.3 835 63.1
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 8.8e-303 1043.5 852 63.0
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.5e-302 1042.7 861 63.0
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.3e-301 1039.6 835 62.9
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 6.3e-301 1037.3 794 65.2
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.4e-300 1035.4 839 62.7
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 2.4e-300 1035.4 809 66.0
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 6.1e-296 1020.8 814 63.5
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 2.7e-291 1005.4 801 63.8
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 3.5e-291 1005.0 743 65.5
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.5e-291 1005.0 796 63.3
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 2.7e-288 995.3 750 67.2
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.7e-288 994.6 743 64.9
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 8.0e-288 993.8 813 61.7
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.0e-287 993.4 795 63.0
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.4e-286 988.4 744 64.9
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 5.4e-284 981.1 781 64.1
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 3.5e-283 978.4 800 61.8
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 3.3e-281 971.8 804 61.1
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 7.5e-278 960.7 763 62.9
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 3.2e-276 955.3 681 67.5
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 7.0e-276 954.1 782 62.1
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 3.5e-275 951.8 829 59.8
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 4.6e-275 951.4 817 60.5
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.9e-275 951.0 748 64.7
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 1.6e-272 943.0 679 65.5
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.1e-272 942.6 852 58.2
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 1.0e-271 940.3 807 58.4
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 8.9e-271 937.2 720 63.2
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.2e-270 936.8 803 59.5
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 5.8e-270 934.5 688 64.2
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 7.5e-270 934.1 687 64.8
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 1.4e-268 929.9 685 64.4
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.4e-268 929.1 801 57.4
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 1.6e-267 926.4 830 59.6
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 7.8e-267 924.1 806 58.6
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 2.3e-266 922.5 819 58.4
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 5.0e-266 921.4 706 62.5
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 6.2e-264 914.4 800 56.9
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 4.0e-263 911.8 826 55.7
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 5.2e-263 911.4 794 58.7
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 4.4e-262 908.3 705 63.1
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 4.4e-262 908.3 808 58.3
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.1e-260 903.7 831 56.7
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 1.4e-260 903.3 796 56.9
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 3.2e-260 902.1 808 56.2
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 7.8e-259 897.5 691 61.8
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 1.0e-258 897.1 798 55.8
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 1.7e-258 896.3 819 55.6
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 5.1e-258 894.8 783 57.6
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 3.6e-256 888.6 785 57.7
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.2e-254 883.6 665 61.8
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 9.9e-254 880.6 695 62.3
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 7.1e-252 874.4 809 54.1
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 3.5e-251 872.1 821 54.7
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 6.0e-251 871.3 665 61.1
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.9e-249 866.3 665 60.5
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.9e-249 866.3 665 60.5
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.9e-249 866.3 665 60.5
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.6e-246 855.9 735 56.7
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 2.4e-244 849.4 656 63.1
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 3.5e-243 845.5 694 61.7
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.5e-241 839.3 620 66.1
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 3.3e-241 839.0 789 53.7
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 3.3e-241 839.0 697 57.1
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 4.3e-241 838.6 584 71.4
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.1e-239 833.9 718 56.4
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 3.1e-239 832.4 663 61.8
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 4.0e-231 805.4 769 52.4
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 2.9e-229 799.3 801 51.7
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 6.0e-227 791.6 804 50.2
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.8e-224 781.9 546 70.9
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 9.0e-223 777.7 685 55.3
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 2.0e-222 776.5 806 49.8
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.1e-220 770.8 660 54.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 3.2e-220 769.2 638 58.3
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 2.6e-206 723.0 608 57.7
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.1e-203 711.8 814 49.3
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.1e-183 647.9 640 50.3
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 8.0e-179 631.7 685 46.1
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 4.5e-174 615.9 572 57.9
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.0e-173 614.8 718 45.8
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 4.1e-151 539.7 387 64.1
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 1.6e-147 527.7 468 57.7
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 7.3e-132 475.7 536 51.1
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.8e-123 446.4 731 40.4
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 9.9e-113 412.1 298 68.5
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.0e-109 402.1 491 48.9
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.8e-101 374.8 390 53.1
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-92 345.5 378 52.9
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 2.8e-91 340.9 717 31.2
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.4e-90 338.6 293 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.7e-75 288.5 657 32.4
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 3.1e-74 284.3 699 30.3
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 4.7e-62 243.8 662 25.7
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 3.4e-60 237.7 702 26.5
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 1.0e-53 216.1 231 52.4
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 8.0e-46 189.9 714 27.6
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.8e-45 188.7 118 72.9
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 1.4e-42 179.1 233 46.8
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 9.2e-34 149.8 222 43.7
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 4.0e-29 134.4 200 43.0
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 3.1e-21 108.2 730 19.5
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-17 96.3 180 39.4
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 3.0e-16 91.7 61 65.6
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 8.1e-14 83.6 51 72.5
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 5.2e-13 80.9 53 71.7
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 6.9e-13 80.5 643 19.3
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 1.9e-10 72.4 55 63.6
AagrBONN_evm.TU.Sc2ySwM_228.1649 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-08 65.5 304 24.3
Sed0013178 Sechium edule HOM05D000001 ORTHO05D000003 1.3e-06 59.7 222 25.7
AagrBONN_evm.TU.Sc2ySwM_228.5321 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-06 58.5 208 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.8e-06 57.8 205 23.9
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 6.2e-06 57.4 350 20.9


User provided reference genes

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