Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 4.2e-251 870.9 455 100.0
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 1.2e-181 640.2 458 77.3
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 8.7e-180 634.0 455 76.9
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 6.9e-177 624.4 453 74.8
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 1.2e-176 623.6 445 75.3
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 2.6e-176 622.5 453 75.3
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 3.2e-174 615.5 450 75.1
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 2.7e-173 612.5 457 74.4
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 5.1e-172 608.2 453 73.7
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 1.5e-171 606.7 457 72.6
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 1.3e-170 603.6 453 73.5
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.4e-169 600.1 448 73.7
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 3.4e-168 595.5 450 72.7
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.7e-167 593.2 458 72.3
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.4e-166 590.1 457 72.9
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 4.6e-165 585.1 455 71.0
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 6.7e-164 581.3 452 71.5
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.5e-163 580.1 444 72.3
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.9e-163 579.7 441 73.7
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 2.2e-162 576.2 457 70.5
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 1.8e-161 573.2 444 71.6
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 3.1e-161 572.4 456 70.2
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 5.3e-161 571.6 460 69.6
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 1.2e-160 570.5 457 70.2
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 2.6e-160 569.3 466 70.2
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.4e-160 568.9 454 69.2
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 7.6e-160 567.8 455 69.9
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 2.9e-159 565.8 481 67.2
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 3.8e-159 565.5 444 71.4
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 1.1e-158 563.9 455 69.0
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 9.3e-158 560.8 440 70.9
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 1.2e-157 560.5 449 69.3
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 1.2e-157 560.5 446 69.3
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 1.6e-157 560.1 446 70.0
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 6.1e-157 558.1 445 70.1
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 1.8e-156 556.6 452 67.0
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 3.3e-155 552.4 445 69.7
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 1.3e-154 550.4 446 67.7
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 3.7e-154 548.9 453 66.0
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 7.7e-152 541.2 427 72.1
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 3.8e-151 538.9 443 67.0
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 2.1e-149 533.1 447 66.7
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 3.6e-149 532.3 443 69.8
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.6e-149 532.3 446 65.5
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 4.7e-149 531.9 454 66.5
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 1.0e-148 530.8 457 66.5
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.1e-147 527.3 444 67.6
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 7.4e-147 524.6 448 66.5
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 2.8e-146 522.7 447 64.9
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 3.7e-146 522.3 447 65.1
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 1.4e-145 520.4 448 67.2
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 2.4e-145 519.6 448 64.7
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 3.1e-145 519.2 447 64.2
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 1.5e-144 516.9 444 66.0
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 5.0e-143 511.9 447 66.9
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 5.5e-142 508.4 460 61.5
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 2.1e-141 506.5 446 63.0
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 2.7e-141 506.1 451 62.7
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 1.0e-140 504.2 449 61.7
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 1.4e-140 503.8 491 59.1
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.1e-139 500.7 445 65.2
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 1.1e-139 500.7 448 64.1
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 4.4e-139 498.8 443 61.4
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 5.7e-139 498.4 449 61.0
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 7.4e-139 498.0 438 63.5
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.7e-138 496.9 438 66.7
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 1.7e-138 496.9 448 61.2
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 1.1e-137 494.2 449 60.4
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 3.1e-137 492.7 419 65.4
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 5.3e-137 491.9 445 60.0
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 3.5e-136 489.2 448 60.3
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 4.5e-136 488.8 448 60.7
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 5.9e-136 488.4 459 62.3
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 8.5e-135 484.6 611 51.4
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 1.5e-134 483.8 452 62.2
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 2.5e-134 483.0 447 59.3
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 1.6e-133 480.3 429 64.6
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 6.1e-133 478.4 454 61.9
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 1.0e-132 477.6 445 59.6
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 8.8e-132 474.6 446 57.2
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 3.3e-131 472.6 383 70.8
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 6.3e-130 468.4 453 57.4
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 9.1e-129 464.5 383 70.2
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 3.8e-127 459.1 447 57.7
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 8.5e-127 458.0 445 61.8
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 2.7e-125 453.0 347 73.5
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 8.0e-125 451.4 473 54.1
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 3.6e-117 426.0 340 67.1
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 9.8e-115 417.9 451 55.0
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.7e-114 416.0 325 73.5
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 1.1e-113 414.5 322 71.4
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.5e-110 404.1 332 66.9
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 2.8e-109 399.8 346 69.7
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 1.8e-108 397.1 408 56.4
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 3.5e-104 382.9 402 59.2
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 4.0e-100 369.4 314 67.2
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 1.4e-89 334.3 261 72.0
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 9.5e-86 321.6 398 49.2
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 2.8e-85 320.1 403 48.9
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 7.6e-83 312.0 271 66.1
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 5.6e-78 295.8 332 50.0
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 9.9e-75 285.0 278 57.2
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 8.1e-69 265.4 426 42.0
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.2e-59 235.0 351 47.3
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 3.8e-58 229.9 284 50.7
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 4.6e-56 223.0 184 64.7
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 3.3e-54 216.9 350 46.0
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 2.9e-50 203.8 609 31.5
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 3.3e-46 190.3 149 68.5
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.4e-43 180.3 250 44.4
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 8.5e-42 175.6 164 70.1
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 1.6e-40 171.4 99 82.8
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 2.1e-40 171.0 101 81.2
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 2.8e-37 160.6 93 77.4
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 2.6e-35 154.1 179 57.0
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 5.9e-35 152.9 179 60.9
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 3.7e-29 133.7 352 33.2
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 2.4e-28 131.0 122 63.1
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 1.3e-26 125.2 105 63.8
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 3.8e-26 123.6 161 52.8
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 3.6e-24 117.1 100 58.0
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 4.1e-20 103.6 114 50.0
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 1.1e-17 95.5 54 79.6
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.5e-17 94.4 143 40.6
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 2.5e-17 94.4 49 87.8
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 2.0e-14 84.7 50 80.0
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 2.0e-14 84.7 50 80.0
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 2.8e-13 80.9 49 77.6
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 3.5e-11 73.9 50 68.0
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 4.5e-11 73.6 83 44.6
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 1.1e-09 68.9 83 49.4
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 1.5e-09 68.6 41 82.9
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 1.5e-09 68.6 49 71.4
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 4.2e-09 67.0 56 53.6
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 6.1e-08 63.2 33 87.9
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 1.2e-06 58.9 37 75.7
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.2e-06 58.9 59 52.5
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 1.5e-06 58.5 54 53.7


User provided reference genes

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