Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 6.0e-249 864.0 526 100.0
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 7.2e-194 681.0 538 78.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.8e-189 666.4 553 76.3
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 3.8e-187 658.7 540 73.7
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 5.1e-184 648.3 535 73.5
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 7.4e-183 644.4 539 71.8
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.3e-182 641.3 539 72.5
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.8e-181 639.8 540 72.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.7e-179 633.3 550 72.2
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 2.9e-179 632.5 536 76.7
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 6.5e-179 631.3 539 68.1
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 6.5e-179 631.3 540 72.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.2e-177 627.1 532 71.4
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.4e-176 623.6 533 73.9
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.0e-176 622.5 538 69.1
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 4.0e-176 622.1 538 74.3
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.6e-175 619.4 543 70.7
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 3.3e-175 619.0 543 69.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 4.4e-175 618.6 538 74.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 9.7e-175 617.5 537 70.6
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 5.3e-173 611.7 535 67.7
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-171 606.7 538 68.2
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.5e-170 602.8 538 71.7
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 3.2e-170 602.4 536 74.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 9.4e-170 600.9 536 70.1
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 9.4e-170 600.9 537 68.3
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 3.6e-169 599.0 542 67.5
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.6e-169 599.0 589 63.5
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.6e-169 599.0 589 63.5
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.3e-168 596.3 541 67.1
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 5.2e-168 595.1 538 67.8
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 5.2e-168 595.1 546 66.5
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 9.1e-165 584.3 538 67.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 9.1e-165 584.3 541 72.1
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 2.7e-164 582.8 538 66.9
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.5e-164 582.0 545 64.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.0e-163 580.9 536 67.0
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.3e-163 580.5 567 63.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 2.9e-163 579.3 537 69.8
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.5e-162 576.2 537 66.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.2e-162 575.9 573 67.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 9.4e-162 574.3 542 65.3
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.7e-161 572.8 542 69.2
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.7e-161 572.8 528 63.4
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.6e-161 572.4 540 71.3
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 4.7e-161 572.0 540 67.8
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.4e-160 570.5 551 70.4
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.0e-160 569.3 527 66.6
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 4.4e-159 565.5 550 69.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.7e-158 563.5 550 68.9
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.4e-157 559.7 547 64.4
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 5.4e-157 558.5 550 65.3
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 2.0e-156 556.6 536 68.8
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 4.5e-156 555.4 578 63.7
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.9e-156 555.1 550 68.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 5.9e-156 555.1 542 67.5
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.7e-156 554.7 525 70.3
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.3e-155 553.9 542 71.2
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 8.6e-155 551.2 540 66.7
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 4.2e-154 548.9 537 64.6
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-153 545.8 552 65.9
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.0e-152 542.7 541 64.7
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 8.9e-152 541.2 489 66.3
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 5.7e-151 538.5 543 59.7
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 3.7e-150 535.8 546 67.6
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 8.3e-150 534.6 562 61.9
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.0e-147 527.7 543 64.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.3e-147 527.3 541 66.2
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 3.9e-147 525.8 553 64.0
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-146 524.2 581 61.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.9e-146 523.5 551 61.3
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.5e-146 523.1 511 69.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.3e-146 522.7 560 63.6
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.3e-146 522.3 526 63.3
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 5.6e-146 521.9 558 66.7
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 2.8e-145 519.6 541 65.1
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 8.0e-145 518.1 543 68.0
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.0e-144 517.7 504 65.9
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 2.3e-144 516.5 499 65.9
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.1e-144 516.2 557 62.7
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 3.1e-144 516.2 544 67.8
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 6.8e-144 515.0 530 60.2
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 8.3e-142 508.1 547 64.9
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.9e-141 506.9 560 57.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 4.1e-141 505.8 535 64.7
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 4.6e-140 502.3 508 67.9
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 7.8e-140 501.5 545 63.3
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 2.3e-139 500.0 512 63.7
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.3e-139 500.0 549 58.8
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.5e-138 494.6 575 60.2
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.8e-137 493.0 547 66.0
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 8.1e-137 491.5 357 75.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 8.1e-137 491.5 540 63.9
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 3.4e-135 486.1 481 65.1
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 5.8e-135 485.3 541 64.1
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 2.9e-134 483.0 543 63.7
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 2.9e-134 483.0 543 63.7
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.4e-133 479.9 832 45.2
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 4.1e-133 479.2 543 64.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 5.4e-133 478.8 520 64.0
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 7.1e-133 478.4 541 63.6
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 9.2e-133 478.0 460 73.7
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 3.9e-131 472.6 557 63.0
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 1.6e-129 467.2 546 62.8
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.8e-129 466.5 522 60.9
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 1.3e-126 457.6 548 62.4
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 2.2e-126 456.8 552 61.1
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 9.2e-125 451.4 544 57.7
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.6e-124 450.7 537 60.1
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.6e-122 441.4 576 55.2
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 4.0e-120 436.0 537 56.2
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.5e-119 434.1 544 55.3
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.7e-118 430.6 479 60.1
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 4.9e-118 429.1 549 54.5
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.1e-117 427.9 538 50.7
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.7e-115 420.6 492 62.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 5.3e-112 409.1 466 63.7
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 6.9e-112 408.7 542 53.1
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.3e-110 404.4 550 50.4
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.7e-110 404.1 548 50.7
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.4e-110 402.1 322 68.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.2e-108 397.9 410 69.3
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 4.6e-108 396.0 525 55.6
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 4.6e-108 396.0 525 55.6
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 6.2e-105 385.6 531 46.5
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 4.5e-103 379.4 549 48.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.9e-99 366.3 542 46.5
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-98 364.8 541 46.4
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.5e-98 364.4 536 46.5
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-98 364.4 541 46.4
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 6.2e-97 359.0 536 46.3
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.1e-96 358.2 540 46.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.1e-96 356.7 422 56.6
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.3e-96 355.9 540 46.1
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 4.5e-95 352.8 511 54.8
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.1e-92 344.0 442 60.9
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 4.1e-88 329.7 361 66.5
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 8.4e-86 322.0 195 79.0
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 8.5e-78 295.4 350 47.7
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 1.6e-76 291.2 313 70.6
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.7e-68 263.1 335 54.3
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.8e-67 261.2 310 56.1
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 3.0e-67 260.4 367 62.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.5e-63 246.9 359 57.1
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-60 237.7 499 38.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.9e-54 217.2 251 57.4
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.2e-44 185.3 344 46.5
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.5e-37 161.8 101 72.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-31 142.1 252 36.9
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.5e-31 140.6 181 55.2
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 8.6e-30 136.0 175 62.3
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 3.6e-28 130.6 285 41.1
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-26 124.0 200 49.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.7e-23 114.4 197 50.3
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.0e-22 110.2 140 42.9
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 4.7e-20 103.6 74 86.5
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.1e-19 100.9 96 57.3
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 4.0e-19 100.5 159 49.7
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 8.9e-19 99.4 56 87.5
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.7e-17 95.1 241 37.3
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.7e-17 94.0 311 29.3
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 4.9e-17 93.6 51 84.3
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.9e-16 91.7 204 36.8
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 7.1e-16 89.7 54 68.5
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.0e-14 84.3 72 59.7
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.1e-14 83.6 204 39.2
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 8.1e-12 76.3 101 51.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-11 75.1 69 59.4
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-11 75.1 69 59.4
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 3.1e-11 74.3 59 59.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 5.2e-11 73.6 98 46.9
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 8.9e-11 72.8 78 59.0
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.2e-09 68.2 133 39.8
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 8.4e-09 66.2 62 54.8
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 8.4e-09 66.2 122 32.8
PSO339G0182 Papaver somniferum HOM05D009217 ORTHO05D009626 3.2e-08 64.3 151 38.4
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-07 61.2 56 57.1
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 1.3e-06 58.9 147 29.3


User provided reference genes

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