Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 6.6e-106 387.5 213 100.0
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.3e-66 256.1 208 66.3
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 3.1e-55 219.2 190 62.6
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 5.5e-52 208.4 199 58.8
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 3.6e-51 205.7 190 59.5
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 8.0e-51 204.5 187 59.4
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 4.0e-50 202.2 224 51.8
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.1e-49 200.7 161 64.0
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 3.3e-49 199.1 132 74.2
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 5.7e-49 198.4 129 74.4
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 7.5e-49 198.0 189 56.6
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 4.8e-48 195.3 128 73.4
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.1e-47 194.1 221 52.0
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.1e-47 194.1 195 57.9
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.4e-47 193.7 189 59.3
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.4e-47 193.7 187 58.8
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 4.1e-47 192.2 190 56.8
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 9.1e-47 191.0 188 56.9
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 9.1e-47 191.0 185 56.2
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.2e-46 190.7 166 62.0
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 2.0e-46 189.9 154 64.9
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.7e-46 189.5 126 74.6
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.5e-46 189.1 126 73.8
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 3.5e-46 189.1 187 56.1
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 4.5e-46 188.7 224 52.7
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 7.7e-46 188.0 186 56.5
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.0e-45 187.6 122 74.6
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.0e-45 187.6 189 58.7
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 1.3e-45 187.2 196 55.6
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.7e-45 186.8 126 72.2
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.9e-45 186.0 191 58.6
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 3.2e-44 182.6 187 56.7
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 4.2e-44 182.2 153 66.7
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 9.4e-44 181.0 194 55.2
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 1.2e-43 180.6 192 57.3
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.2e-43 180.6 190 54.7
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 2.1e-43 179.9 138 64.5
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 2.1e-43 179.9 187 54.5
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 2.7e-43 179.5 171 58.5
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 4.7e-43 178.7 203 51.2
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.0e-42 177.6 124 69.4
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 1.4e-42 177.2 113 75.2
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 1.8e-42 176.8 198 53.5
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.8e-42 176.8 144 64.6
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 1.8e-42 176.8 101 80.2
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.3e-42 176.4 119 71.4
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.3e-42 176.4 119 71.4
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 8.8e-42 174.5 205 50.7
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 1.2e-41 174.1 179 55.3
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 2.0e-41 173.3 121 73.6
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 2.6e-41 172.9 122 72.1
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.4e-41 172.2 189 56.1
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.4e-41 172.2 189 56.1
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 4.4e-41 172.2 196 55.6
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 7.5e-41 171.4 97 81.4
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 9.8e-41 171.0 192 54.7
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 9.8e-41 171.0 216 52.8
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.3e-40 170.6 182 54.9
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 2.2e-40 169.9 190 53.2
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 2.8e-40 169.5 190 53.7
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 8.3e-40 167.9 182 54.9
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.1e-39 167.5 188 53.7
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-39 167.5 173 54.9
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-39 167.5 173 54.9
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.8e-39 166.8 192 55.2
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 3.1e-39 166.0 99 78.8
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 3.1e-39 166.0 113 73.5
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 4.1e-39 165.6 183 53.6
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 4.1e-39 165.6 122 67.2
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 5.4e-39 165.2 189 55.0
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 9.1e-39 164.5 140 64.3
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 1.2e-38 164.1 121 66.9
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 1.2e-38 164.1 173 57.8
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 2.7e-38 162.9 238 47.5
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 3.5e-38 162.5 159 59.1
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 4.5e-38 162.2 123 65.9
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 4.5e-38 162.2 123 65.9
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 4.5e-38 162.2 209 50.7
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 4.5e-38 162.2 209 48.8
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 4.5e-38 162.2 201 50.7
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 5.9e-38 161.8 113 69.9
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 5.9e-38 161.8 187 52.9
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 5.9e-38 161.8 129 66.7
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.0e-37 161.0 113 69.0
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.0e-37 161.0 199 50.8
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 1.0e-37 161.0 125 64.0
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.0e-37 161.0 171 54.4
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.0e-37 161.0 92 80.4
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.0e-37 161.0 158 58.2
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 1.3e-37 160.6 113 69.0
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.7e-37 160.2 144 59.7
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 2.9e-37 159.5 128 65.6
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 3.8e-37 159.1 119 66.4
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 3.8e-37 159.1 205 50.2
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 3.8e-37 159.1 205 50.2
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 6.5e-37 158.3 180 53.9
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 8.5e-37 157.9 133 61.7
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 8.5e-37 157.9 184 51.6
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.5e-36 157.1 119 65.5
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.9e-36 156.8 122 67.2
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 3.2e-36 156.0 111 68.5
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 3.2e-36 156.0 206 47.6
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 4.2e-36 155.6 202 47.0
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 5.5e-36 155.2 211 49.8
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 1.6e-35 153.7 209 50.7
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 3.6e-35 152.5 193 47.7
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 8.0e-35 151.4 110 69.1
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 3.0e-34 149.4 133 60.2
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 6.8e-34 148.3 146 57.5
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 8.8e-34 147.9 188 48.4
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 8.8e-34 147.9 208 48.1
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 1.5e-33 147.1 192 54.2
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.5e-33 147.1 128 60.2
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.0e-33 146.7 178 55.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 2.6e-33 146.4 188 47.9
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 3.4e-33 146.0 130 60.8
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 4.4e-33 145.6 128 60.2
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 7.5e-33 144.8 121 63.6
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 7.5e-33 144.8 198 46.5
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 7.5e-33 144.8 198 46.5
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 1.3e-32 144.1 91 73.6
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 1.7e-32 143.7 195 49.2
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.7e-32 143.7 190 47.4
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.7e-32 143.7 188 47.3
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 2.2e-32 143.3 190 47.9
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 2.2e-32 143.3 192 48.4
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 2.8e-32 142.9 230 44.3
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.8e-32 142.9 188 47.3
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 4.9e-32 142.1 203 45.8
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 6.3e-32 141.7 188 46.8
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 6.3e-32 141.7 159 54.7
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 8.3e-32 141.4 156 54.5
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 8.3e-32 141.4 190 46.3
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 1.1e-31 141.0 140 56.4
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.4e-31 139.8 173 50.9
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 2.4e-31 139.8 185 49.2
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.4e-31 139.8 171 50.3
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 4.1e-31 139.0 140 56.4
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 5.4e-31 138.7 158 51.9
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 7.0e-31 138.3 149 60.4
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 7.0e-31 138.3 161 56.5
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 7.0e-31 138.3 161 56.5
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 7.0e-31 138.3 188 45.2
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.6e-30 137.1 192 47.9
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 1.6e-30 137.1 177 50.3
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 3.5e-30 136.0 116 62.1
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.3e-29 133.3 182 52.2
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 2.9e-29 132.9 101 63.4
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 2.9e-29 132.9 101 63.4
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.8e-29 132.5 173 52.6
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 8.6e-29 131.3 172 51.7
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.5e-28 130.6 80 78.8
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 3.3e-28 129.4 145 53.8
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.2e-27 127.5 214 46.7
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-27 127.5 125 58.4
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-27 127.5 125 58.4
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 4.7e-27 125.6 143 55.2
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 8.0e-27 124.8 154 52.6
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.0e-26 124.4 150 52.0
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.0e-26 124.4 150 52.0
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.3e-26 123.2 109 58.7
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 2.3e-26 123.2 109 58.7
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-25 120.2 96 63.5
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.6e-25 119.8 128 54.7
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.1e-23 114.4 95 63.2
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 1.8e-23 113.6 62 79.0
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 1.2e-22 110.9 62 80.6
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 3.5e-22 109.4 56 87.5
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 1.5e-20 104.0 84 63.1
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 9.5e-20 101.3 137 54.0
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.8e-18 97.1 177 40.7
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 2.3e-18 96.7 163 40.5
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 1.0e-13 81.3 41 80.5
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.5e-12 76.6 149 38.9
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 1.2e-11 74.3 68 57.4
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 4.7e-11 72.4 66 57.6
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 6.2e-11 72.0 68 55.9
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 4.9e-08 62.4 41 63.4
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 1.4e-07 60.8 82 46.3
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 2.7e-06 56.6 144 38.2


User provided reference genes

Program Settings