Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12114 Avicennia marina HOM05D005550 ORTHO05D006679 4.3e-281 970.7 496 100.0
SGA_v2.0_scaffold104G30171 Striga asiatica HOM05D005550 ORTHO05D006679 2.9e-253 878.2 526 85.9
Migut.A01122 Erythranthe guttata HOM05D005550 ORTHO05D006679 9.3e-252 873.2 513 87.5
Actinidia02146 Actinidia chinensis HOM05D005550 ORTHO05D006679 2.4e-247 858.6 513 85.4
Hma1.2p1_1136F.1_g260510 Hydrangea macrophylla HOM05D005550 ORTHO05D006679 1.3e-245 852.8 513 85.4
Hma1.2p1_1136F.1_g260520 Hydrangea macrophylla HOM05D005550 ORTHO05D006679 1.3e-245 852.8 513 85.4
Cc08_g12230 Coffea canephora HOM05D005550 ORTHO05D006679 6.4e-245 850.5 512 85.4
Duzib068G0290 Durio zibethinus HOM05D005550 ORTHO05D006679 7.1e-244 847.0 513 83.0
Thecc.03G248800 Theobroma cacao HOM05D005550 ORTHO05D006679 3.5e-243 844.7 513 82.7
Atru.chr9.1288 Acer truncatum HOM05D005550 ORTHO05D006679 6.0e-243 844.0 513 82.5
QL12p011636 Quercus lobata HOM05D005550 ORTHO05D006679 7.9e-243 843.6 536 80.4
HanXRQChr06g0164431 Helianthus annuus HOM05D005550 ORTHO05D006679 5.1e-242 840.9 513 83.6
Sopen08g003270 Solanum pennellii HOM05D005550 ORTHO05D006679 8.7e-242 840.1 513 83.8
Ciclev10018920m.g Citrus clementina HOM05D005550 ORTHO05D006679 2.5e-241 838.6 513 82.1
Prupe.5G066100 Prunus persica HOM05D005550 ORTHO05D006679 5.6e-241 837.4 513 82.1
CSS0014382 Camellia sinensis var. sinensis HOM05D005550 ORTHO05D006679 9.6e-241 836.6 513 83.6
Gorai.008G234100 Gossypium raimondii HOM05D005550 ORTHO05D006679 1.6e-240 835.9 513 81.1
Solyc08g007330.3 Solanum lycopersicum HOM05D005550 ORTHO05D006679 2.8e-240 835.1 513 83.2
Gohir.D12G218532 Gossypium hirsutum HOM05D005550 ORTHO05D006679 3.7e-240 834.7 513 80.9
CANSAT21G2208 Cannabis sativa HOM05D005550 ORTHO05D006679 1.8e-239 832.4 517 82.4
ECA248G1640 Erigeron canadensis HOM05D005550 ORTHO05D006679 9.0e-239 830.1 512 82.4
Sed0012504 Sechium edule HOM05D005550 ORTHO05D006679 1.0e-237 826.6 513 80.9
Sc22g0000960 Simmondsia chinensis HOM05D005550 ORTHO05D006679 2.5e-236 822.0 513 81.3
Potri.001G156200 Populus trichocarpa HOM05D005550 ORTHO05D006679 3.2e-236 821.6 513 80.3
TAR375G0818 Trochodendron aralioides HOM05D005550 ORTHO05D006679 5.5e-236 820.8 511 80.4
FvH4_5g19230 Fragaria vesca HOM05D005550 ORTHO05D006679 7.1e-236 820.5 513 79.9
RcHm_v2.0_Chr7g0203731 Rosa chinensis HOM05D005550 ORTHO05D006679 1.6e-235 819.3 513 80.1
MELO3C005519.2 Cucumis melo HOM05D005550 ORTHO05D006679 3.5e-235 818.1 513 80.7
THA.LOC104812808 Tarenaya hassleriana HOM05D005550 ORTHO05D006679 3.9e-234 814.7 513 79.7
TWI15G1253 Tripterygium wilfordii HOM05D005550 ORTHO05D006679 3.9e-234 814.7 513 79.9
ClCG01G004190 Citrullus lanatus HOM05D005550 ORTHO05D006679 8.7e-234 813.5 531 78.3
Lsat_1_v5_gn_3_1200 Lactuca sativa HOM05D005550 ORTHO05D006679 1.9e-233 812.4 517 81.2
PGR042G2104 Punica granatum HOM05D005550 ORTHO05D006679 2.1e-232 808.9 513 79.9
Eucgr.E00409 Eucalyptus grandis HOM05D005550 ORTHO05D006679 3.7e-232 808.1 513 79.9
Nn6g33903 Nelumbo nucifera HOM05D005550 ORTHO05D006679 4.8e-232 807.7 511 79.5
CsaV3_5G004390 Cucumis sativus L. HOM05D005550 ORTHO05D006679 6.3e-232 807.4 513 79.5
Carub.0007s2403 Capsella rubella HOM05D005550 ORTHO05D006679 8.2e-232 807.0 513 78.8
MBI04_g09523_MAGBIO Magnolia biondii HOM05D005550 ORTHO05D006679 2.4e-231 805.4 524 79.6
Thhalv10024454m.g Eutrema salsugineum HOM05D005550 ORTHO05D006679 9.0e-231 803.5 513 78.9
PSO782G0795 Papaver somniferum HOM05D005550 ORTHO05D006679 2.0e-230 802.4 508 79.7
Aqoxy7G00819 Aquilegia oxysepala HOM05D005550 ORTHO05D006679 3.8e-229 798.1 534 76.4
AL7G37330 Arabidopsis lyrata HOM05D005550 ORTHO05D006679 1.1e-228 796.6 513 77.4
AT4G17380 Arabidopsis thaliana HOM05D005550 ORTHO05D006679 1.1e-228 796.6 513 77.4
Glyma.11G034600 Glycine max HOM05D005550 ORTHO05D006679 6.1e-227 790.8 513 77.8
CARHR223990 Cardamine hirsuta HOM05D005550 ORTHO05D006679 1.3e-226 789.6 513 76.6
PSO063G2362 Papaver somniferum HOM05D005550 ORTHO05D006679 2.3e-226 788.9 518 78.0
Phvul.002G057100 Phaseolus vulgaris HOM05D005550 ORTHO05D006679 3.0e-226 788.5 496 79.4
BcaC07g38064 Brassica carinata HOM05D005550 ORTHO05D006679 2.5e-225 785.4 513 76.6
BolC8t48465H Brassica oleracea HOM05D005550 ORTHO05D006679 2.2e-224 782.3 513 76.2
SalBow6G3355 Salvia bowleyana HOM05D005550 ORTHO05D006679 1.4e-223 779.6 513 79.5
FAN04G3230 Fragaria x ananassa HOM05D005550 ORTHO05D006679 5.3e-223 777.7 517 76.6
VMungo1215G0570 Vigna mungo HOM05D005550 ORTHO05D006679 1.5e-222 776.2 513 77.2
BraA08t33293Z Brassica rapa HOM05D005550 ORTHO05D006679 2.0e-222 775.8 513 75.6
A08p13130 Brassica napus HOM05D005550 ORTHO05D006679 3.4e-222 775.0 513 75.8
Lj2g0021636 Lotus japonicus HOM05D005550 ORTHO05D006679 1.3e-221 773.1 513 75.8
FAN08G0299 Fragaria x ananassa HOM05D005550 ORTHO05D006679 2.9e-221 771.9 530 75.1
CiPaw.11G081300 Carya illinoinensis HOM05D005550 ORTHO05D006679 3.8e-221 771.5 513 78.2
Medtr5g012900 Medicago truncatula HOM05D005550 ORTHO05D006679 1.9e-220 769.2 513 75.8
BcaB04g18410 Brassica carinata HOM05D005550 ORTHO05D006679 5.5e-220 767.7 542 72.3
Ca_24591_v3 Cicer arietinum L. HOM05D005550 ORTHO05D006679 9.4e-220 766.9 513 75.8
Aa31LG6G120 Aethionema arabicum HOM05D005550 ORTHO05D006679 1.6e-219 766.1 554 71.3
TPR.G18117 Trifolium pratense HOM05D005550 ORTHO05D006679 1.0e-218 763.5 513 75.0
Psat2g176640 Pisum sativum HOM05D005550 ORTHO05D006679 3.9e-218 761.5 513 74.9
Rhsim11G0009700 Rhododendron simsii HOM05D005550 ORTHO05D006679 1.1e-215 753.4 513 77.0
Sabra01G0134700 Salix brachista HOM05D005550 ORTHO05D006679 2.4e-215 752.3 496 77.0
Nitab4.5_0002225g0010 Nicotiana tabacum HOM05D005550 ORTHO05D006679 1.2e-214 750.0 474 80.6
ATR0057G027 Amborella trichopoda HOM05D005550 ORTHO05D006679 4.5e-214 748.0 513 72.9
FAN18G0162 Fragaria x ananassa HOM05D005550 ORTHO05D006679 4.5e-214 748.0 509 76.0
Nitab4.5_0000712g0130 Nicotiana tabacum HOM05D005550 ORTHO05D006679 1.0e-213 746.9 563 71.0
AUR62019968 Chenopodium quinoa HOM05D005550 ORTHO05D006679 1.2e-211 740.0 496 77.4
AUR62007105 Chenopodium quinoa HOM05D005550 ORTHO05D006679 3.0e-210 735.3 496 77.4
Peaxi162Scf00102g01071 Petunia axillaris HOM05D005550 ORTHO05D006679 2.0e-209 732.6 474 80.6
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 1.3e-208 729.9 493 76.9
EL10Ac5g12365 Beta vulgaris HOM05D005550 ORTHO05D006679 1.0e-205 720.3 513 73.5
arahy.Tifrunner.gnm1.ann1.7NLF36 Arachis hypogaea HOM05D005550 ORTHO05D006679 4.0e-202 708.4 513 71.7
vmacro00189 Vaccinium macrocarpon HOM05D005550 ORTHO05D006679 1.8e-199 699.5 671 60.1
MD04G1062200 Malus domestica HOM05D005550 ORTHO05D006679 3.1e-199 698.7 437 80.1
arahy.Tifrunner.gnm1.ann1.XE7N8H Arachis hypogaea HOM05D005550 ORTHO05D006679 5.9e-198 694.5 524 69.8
HPP92_025386 Vanilla planifolia HOM05D005550 ORTHO05D006679 1.5e-196 689.9 492 70.9
SHI20465 Sapria himalayana HOM05D005550 ORTHO05D006679 1.1e-191 673.7 507 70.2
DCAR_006840 Daucus carota HOM05D005550 ORTHO05D006679 3.1e-191 672.2 455 76.3
Lalb_Chr16g0379511 Lupinus albus HOM05D005550 ORTHO05D006679 5.4e-191 671.4 485 72.2
COL.COLO4_37144 Corchorus olitorius HOM05D005550 ORTHO05D006679 1.2e-177 627.1 384 83.1
Pp3c2_940 Physcomitrium patens HOM05D005550 ORTHO05D006679 3.1e-154 549.3 510 56.5
Mapoly0001s0167 Marchantia polymorpha HOM05D005550 ORTHO05D006679 1.1e-151 540.8 515 55.7
AagrBONN_evm.TU.Sc2ySwM_344.184 Anthoceros agrestis HOM05D005550 ORTHO05D006679 9.2e-151 537.7 514 54.9
Zm00001eb105070 Zea mays HOM05D005550 ORTHO05D006679 5.1e-141 505.4 349 72.5
Lj2A221T32 Lonicera japonica HOM05D005550 ORTHO05D006679 8.1e-139 498.0 306 84.3
SMO340G0170 Selaginella moellendorffii HOM05D005550 ORTHO05D006679 8.7e-133 478.0 517 50.9
GSVIVG01004727001 Vitis vinifera HOM05D005550 ORTHO05D006679 1.4e-127 460.7 264 86.4
Hund11605 Selenicereus undatus HOM05D005550 ORTHO05D006679 1.6e-126 457.2 334 72.2
CAN.G1227.20 Capsicum annuum HOM05D005550 ORTHO05D006679 2.5e-119 433.3 278 79.9
Manes.01G082400 Manihot esculenta HOM05D005550 ORTHO05D006679 9.3e-119 431.4 278 77.7
Gohir.A12G215932 Gossypium hirsutum HOM05D005550 ORTHO05D006679 6.9e-106 388.7 221 85.1
CDE04G2441 Ceratophyllum demersum HOM05D005550 ORTHO05D006679 1.4e-103 380.9 438 52.1
Os07g0486000 Oryza sativa ssp. japonica HOM05D005550 ORTHO05D006679 6.3e-99 365.5 237 77.6
CBR_g547 Chara braunii HOM05D005550 ORTHO05D006679 3.1e-74 283.5 504 37.7
unitig_744.g24475 Utricularia gibba HOM05D005550 ORTHO05D006679 5.5e-71 272.7 156 87.2
Haze_16325 Corylus avellana HOM05D005550 ORTHO05D006679 6.6e-64 249.2 143 85.3
Lj2C221G5 Lonicera japonica HOM05D005550 ORTHO05D006679 3.6e-62 243.4 139 87.8
GSVIVG01004726001 Vitis vinifera HOM05D005550 ORTHO05D006679 6.1e-62 242.7 140 86.4
PGSC0003DMG400012503 Solanum tuberosum HOM05D005550 ORTHO05D006679 3.3e-55 220.3 144 77.8
BolC8t48469H Brassica oleracea HOM05D005550 ORTHO05D006679 1.7e-51 208.0 131 80.2
FAN13G1102 Fragaria x ananassa HOM05D005550 ORTHO05D006679 2.3e-48 197.6 179 60.3
SEGI_18944 Sequoiadendron giganteum HOM05D005550 ORTHO05D006679 6.6e-48 196.1 136 75.0
PRCOL_00003604 Prasinoderma coloniale HOM05D005550 ORTHO05D006679 2.7e-41 174.1 471 29.9
Cpa.g.sc29.182 Carica papaya HOM05D005550 ORTHO05D006679 8.1e-38 162.5 99 82.8
BcaC07g38067 Brassica carinata HOM05D005550 ORTHO05D006679 3.0e-32 144.1 92 82.6
Cpa.g.sc29.180 Carica papaya HOM05D005550 ORTHO05D006679 1.5e-31 141.7 96 74.0
MCO13G611 Micromonas commoda HOM05D005550 ORTHO05D006679 3.6e-30 137.1 615 27.2
Cfa026892 Carpinus fangiana HOM05D001061 ORTHO05D006679 1.8e-29 134.8 493 24.5
unitig_744.g24474 Utricularia gibba HOM05D005550 ORTHO05D006679 5.8e-28 129.8 163 49.1
Haze_16327 Corylus avellana HOM05D005550 ORTHO05D006679 2.5e-23 114.4 65 83.1
Hund11606 Selenicereus undatus HOM05D005550 ORTHO05D006679 4.2e-18 97.1 77 67.5
SEGI_25288 Sequoiadendron giganteum HOM05D005550 ORTHO05D006679 7.9e-17 92.8 74 62.2
Potri.003G078601 Populus trichocarpa HOM05D005550 ORTHO05D006679 2.3e-16 91.3 53 81.1
MBI06_g10737_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D011024 5.6e-15 86.7 53 77.4
Cpa.g.sc29.183 Carica papaya HOM05D005550 ORTHO05D006679 3.1e-13 80.9 48 79.2
Nn2g12866 Nelumbo nucifera HOM05D005550 ORTHO05D006679 2.0e-12 78.2 48 70.8
SEGI_10856 Sequoiadendron giganteum HOM05D005550 ORTHO05D006679 1.3e-11 75.5 55 65.5
MBI15_g30439_MAGBIO Magnolia biondii HOM05D005550 ORTHO05D011024 1.7e-11 75.1 41 85.4
Lalb_Chr16g0379501 Lupinus albus HOM05D005550 ORTHO05D006679 2.2e-11 74.7 47 78.7
Nn1g05728 Nelumbo nucifera HOM05D005550 ORTHO05D006679 4.9e-11 73.6 57 70.2
Nn1g05737 Nelumbo nucifera HOM05D005550 ORTHO05D006679 4.9e-11 73.6 57 70.2
Haze_16328 Corylus avellana HOM05D005550 ORTHO05D006679 8.4e-11 72.8 40 87.5
MBI06_g16692_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D008292 2.4e-10 71.2 40 80.0
Cre16.g692550 Chlamydomonas reinhardtii HOM05D005550 ORTHO05D006679 3.2e-10 70.9 455 23.1
SEGI_35945 Sequoiadendron giganteum HOM05D005550 ORTHO05D006679 6.0e-09 66.6 47 66.0
Gohir.A12G215866 Gossypium hirsutum HOM05D005550 ORTHO05D006679 1.0e-08 65.9 37 83.8
Gohir.A06G061200 Gossypium hirsutum HOM05D001061 ORTHO05D007103 1.3e-06 58.9 155 31.0
FAN08G1716 Fragaria x ananassa HOM05D001061 ORTHO05D006881 2.8e-06 57.8 359 24.8
MSTRG.10679 Avicennia marina HOM05D001061 ORTHO05D007103 3.7e-06 57.4 96 33.3
Ciclev10007291m.g Citrus clementina HOM05D001061 ORTHO05D007103 8.2e-06 56.2 148 32.4
Gohir.D06G059600 Gossypium hirsutum HOM05D001061 ORTHO05D007103 8.2e-06 56.2 158 29.7
Gorai.010G069400 Gossypium raimondii HOM05D001061 ORTHO05D007103 8.2e-06 56.2 158 29.7


User provided reference genes

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