Gene: PGR042G2104
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR042G2104
- Transcript Identifier PGR042G2104.01
- Gene Type Coding gene
- Location NC_045130.1 : 1807576-1814688 : negative
Gene Family Information
- ID HOM05D005550
- #Genes/#Species 138/97
- Phylogenetic origin
- ID ORTHO05D006679
- #Genes/#Species 139/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031392711.1
- name LOC116204660
- name XM_031536851.1
- id gene-LOC116204660
- uniprot A0A6P8D6F5
Descriptions
- product DNA mismatch repair protein MSH4, transcript variant X1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006298 | IEA | GOA Database | mismatch repair | |
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0045143 | ISO | PLAZA Integrative Orthology | homologous chromosome segregation | AT4G17380 |
| GO:0010777 | ISO | PLAZA Integrative Orthology | meiotic mismatch repair involved in reciprocal meiotic recombination | AT4G17380 |
| GO:0007129 | ISO | PLAZA Integrative Orthology | homologous chromosome pairing at meiosis | AT4G17380 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0030983 | IEA | GOA Database | mismatched DNA binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0043073 | ISO | PLAZA Integrative Orthology | germ cell nucleus | AT4G17380 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G17380 |
| GO:0000794 | ISO | PLAZA Integrative Orthology | condensed nuclear chromosome | AT4G17380 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR045076 | DNA mismatch repair MutS family |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| IPR011184 | DNA mismatch repair Msh2-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR007696 | DNA mismatch repair protein MutS, core |
| IPR007861 | DNA mismatch repair protein MutS, clamp |
| IPR036678 | MutS, connector domain superfamily |
| Mapman id | Description |
|---|---|
| 13.3.5.5.1.2.1 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH4 |