Gene: Solyc08g007330.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g007330.3
  • Transcript Identifier Solyc08g007330.3.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 1900654-1914073 : negative

Gene Family Information

  • ID HOM05D005550
  • #Genes/#Species 138/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g007330.3.1
  • uniprot A0A3Q7IEM5
  • gene_id Solyc08g007330

Descriptions

  • Description DNA mismatch repair protein MutS (AHRD V3.3 *** A0A200Q639_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT4G17380
GO:0010777
ISO
PLAZA Integrative Orthologymeiotic mismatch repair involved in reciprocal meiotic recombination AT4G17380
GO:0045143
ISO
PLAZA Integrative Orthologyhomologous chromosome segregation AT4G17380
GO:0000712
IBA
GOA Databaseresolution of meiotic recombination intermediates
GO:0000710
IBA
GOA Databasemeiotic mismatch repair
GO:0006298
IEA
GOA Databasemismatch repair
GO:0006298
IEA
InterPromismatch repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0030983
IEA
GOA Databasemismatched DNA binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000795
IBA
GOA Databasesynaptonemal complex
GO:0000794
ISO
PLAZA Integrative Orthologycondensed nuclear chromosome AT4G17380
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G17380
GO:0043073
ISO
PLAZA Integrative Orthologygerm cell nucleus AT4G17380
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR007861 DNA mismatch repair protein MutS, clamp
IPR045076 DNA mismatch repair MutS family
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
IPR007696 DNA mismatch repair protein MutS, core
IPR017261 DNA mismatch repair protein MutS/MSH
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
13.3.5.5.1.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH4