Gene: PGSC0003DMG400012503

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400012503
  • Transcript Identifier PGSC0003DMT400032552
  • Gene Type Coding gene
  • Location ST4.03ch08 : 581900-587998 : positive

Gene Family Information

  • ID HOM05D005550
  • #Genes/#Species 138/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37471075
  • id PGSC0003DMG400012503.v4.03
  • uniprot M1AXL9

Descriptions

  • Description DNA mismatch repair protein mutS
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007129
IEA
GOA Databasehomologous chromosome pairing at meiosis
GO:0010777
IEA
GOA Databasemeiotic mismatch repair involved in reciprocal meiotic recombination
GO:0045143
IEA
GOA Databasehomologous chromosome segregation
GO:0000712
IBA
GOA Databaseresolution of meiotic recombination intermediates
GO:0000710
IBA
GOA Databasemeiotic mismatch repair
GO:0006298
IEA
GOA Databasemismatch repair
GO:0006298
IEA
InterPromismatch repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0030983
IEA
GOA Databasemismatched DNA binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000795
IBA
GOA Databasesynaptonemal complex
GO:0009506
IEA
GOA Databaseplasmodesma
GO:0043073
IEA
GOA Databasegerm cell nucleus
GO:0000794
IEA
GOA Databasecondensed nuclear chromosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007861 DNA mismatch repair protein MutS, clamp
IPR045076 DNA mismatch repair MutS family
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
Mapman id Description
13.3.5.5.1.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH4