Gene: Sopen08g003270

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g003270
  • Transcript Identifier Sopen08g003270.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 2117225-2130654 : negative

Gene Family Information

  • ID HOM05D005550
  • #Genes/#Species 138/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g003270.1

Descriptions

  • Description Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination. | MUTS-like protein 4 (MSH4) | FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding | INVOLVED IN: mismatch repair, synapsis, meiotic prophase I | LOCATED IN: condensed nuclear chromosome | EXPRESSED IN: flower, sporocyte | EXPRESSED DURING: petal differentiation and expansion stage, IL.00 inflorescence just visible | CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp , DNA mismatch repair protein MutS, C-terminal , DNA mismatch repair protein MutS, core | BEST Arabidopsis thaliana protein match is: MUTS homolog 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006298
IEA
InterPromismatch repair
GO:0045143
ISO
PLAZA Integrative Orthologyhomologous chromosome segregation AT4G17380
GO:0010777
ISO
PLAZA Integrative Orthologymeiotic mismatch repair involved in reciprocal meiotic recombination AT4G17380
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT4G17380

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0030983
IEA
InterPromismatched DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043073
ISO
PLAZA Integrative Orthologygerm cell nucleus AT4G17380
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G17380
GO:0000794
ISO
PLAZA Integrative Orthologycondensed nuclear chromosome AT4G17380

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR007696 DNA mismatch repair protein MutS, core
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
IPR045076 DNA mismatch repair MutS family
IPR007861 DNA mismatch repair protein MutS, clamp
IPR017261 DNA mismatch repair protein MutS/MSH
Mapman id Description
13.3.5.5.1.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH4