Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 0.0e+00 1609.3 797 100.0
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 0.0e+00 1525.8 799 94.4
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 0.0e+00 1441.4 798 89.8
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 0.0e+00 1296.6 798 81.0
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 0.0e+00 1099.0 798 68.9
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 0.0e+00 1088.2 793 68.3
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 0.0e+00 1087.8 795 68.1
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 0.0e+00 1079.3 801 67.8
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 0.0e+00 1076.2 785 68.3
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 7.8e-309 1063.5 763 68.4
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 8.0e-306 1053.5 797 65.4
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.1e-305 1053.1 797 65.4
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.0e-304 1048.9 786 67.0
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 5.8e-304 1047.3 788 66.8
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 7.5e-304 1047.0 746 69.6
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 2.4e-302 1042.0 793 65.4
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 1.2e-301 1039.6 800 63.9
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 5.1e-300 1034.2 778 66.8
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.1e-297 1026.5 759 67.3
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 5.2e-297 1024.2 782 65.3
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 6.8e-297 1023.8 781 65.6
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 5.8e-296 1020.8 717 69.3
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 5.1e-292 1007.7 658 71.6
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 4.3e-291 1004.6 791 63.7
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 1.6e-290 1002.7 807 63.2
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 1.6e-290 1002.7 696 68.8
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.6e-288 995.3 696 68.2
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 9.9e-288 993.4 795 63.0
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 3.8e-287 991.5 806 62.9
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.4e-286 989.6 803 62.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.4e-286 988.8 724 67.0
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 3.2e-286 988.4 723 66.9
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 4.2e-286 988.0 786 64.1
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.2e-285 986.5 749 64.9
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.6e-285 986.1 743 63.8
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.0e-284 983.4 773 63.6
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.3e-284 982.2 724 66.9
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.9e-283 979.2 699 68.1
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 5.6e-283 977.6 745 65.2
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 9.0e-281 970.3 768 63.2
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.5e-280 969.5 740 64.1
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 2.0e-280 969.1 678 67.8
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 3.8e-279 964.9 704 66.6
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 6.4e-279 964.1 796 62.1
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 6.4e-279 964.1 779 62.3
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 8.4e-279 963.8 754 63.9
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.7e-277 958.7 814 60.1
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.9e-275 952.6 783 60.2
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.3e-273 944.5 732 65.4
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 7.6e-272 940.6 689 65.3
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 2.9e-271 938.7 687 64.8
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 6.0e-269 931.0 799 59.8
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 2.1e-266 922.5 763 61.3
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 2.4e-265 919.1 815 57.2
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 3.1e-265 918.7 768 60.7
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 3.4e-264 915.2 793 59.8
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 2.7e-261 905.6 681 62.8
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 7.9e-261 904.0 799 56.9
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 7.9e-261 904.0 748 60.6
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 2.3e-260 902.5 704 61.1
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 3.0e-260 902.1 808 56.8
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 6.7e-260 901.0 789 58.2
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 8.7e-260 900.6 794 57.9
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 1.4e-257 893.3 804 55.7
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 6.9e-257 891.0 793 57.0
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 2.0e-256 889.4 703 60.9
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 3.4e-256 888.6 808 56.6
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 2.2e-255 885.9 739 58.3
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 7.1e-254 880.9 785 55.8
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 2.1e-253 879.4 696 61.6
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.1e-253 879.4 808 55.9
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.7e-253 879.0 812 54.7
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 1.8e-252 876.3 703 60.6
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 3.9e-252 875.2 770 57.0
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 9.0e-249 864.0 667 61.6
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 1.1e-246 857.1 785 54.6
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 1.1e-246 857.1 785 54.6
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 1.1e-246 857.1 785 54.6
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 7.9e-245 850.9 704 59.7
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 2.3e-244 849.4 774 54.8
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.7e-239 833.2 618 66.8
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.9e-238 829.7 654 61.5
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 2.5e-238 829.3 772 53.9
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 7.9e-237 824.3 683 58.3
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 2.0e-235 819.7 568 70.8
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.3e-234 817.0 680 58.2
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 1.7e-234 816.6 654 60.9
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 2.0e-232 809.7 656 58.8
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 8.5e-231 804.3 773 52.3
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 1.9e-230 803.1 670 57.3
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 1.6e-229 800.0 803 51.8
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 1.8e-228 796.6 608 64.3
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 2.0e-227 793.1 684 54.7
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 4.7e-221 771.9 668 57.6
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.4e-220 770.4 664 56.2
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.7e-213 746.1 541 67.1
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 5.4e-209 731.9 813 49.3
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.3e-183 646.7 569 58.7
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.2e-181 641.0 753 45.2
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.7e-175 620.5 724 46.0
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 6.6e-175 618.6 685 48.2
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 8.7e-143 511.9 413 61.7
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 7.4e-142 508.8 461 55.5
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 2.0e-126 457.6 537 47.3
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.0e-114 416.4 597 42.5
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 3.0e-111 407.1 304 68.8
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 4.0e-111 406.8 495 46.5
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 7.2e-97 359.4 373 55.2
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 4.5e-91 340.1 663 32.0
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 8.9e-87 325.9 311 55.3
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.2e-86 325.5 378 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.1e-71 275.8 651 28.6
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 3.5e-67 260.8 650 27.7
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 5.1e-66 256.9 698 26.1
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.0e-58 231.1 231 55.4
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 4.7e-56 223.8 670 25.7
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 3.4e-46 191.0 150 58.7
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.9e-44 185.3 693 25.0
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 4.2e-44 184.1 190 53.2
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 7.6e-30 136.7 200 39.0
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 5.1e-26 124.0 170 42.4
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 3.9e-18 97.8 85 52.9
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 2.5e-17 95.1 683 18.6
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 4.1e-15 87.8 646 19.5
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 9.1e-15 86.7 64 59.4
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 3.2e-12 78.2 76 50.0
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.2e-11 76.3 55 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3815__3816 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.2e-08 63.5 379 21.9
FAN07G0233 Fragaria x ananassa HOM05D008684 ORTHO05D010796 1.1e-07 63.2 413 19.1
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 2.4e-07 62.0 274 24.8
AagrBONN_evm.TU.Sc2ySwM_362.2108 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.3e-07 60.8 387 20.4
AagrBONN_evm.TU.Sc2ySwM_362.2765 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.3e-07 60.8 344 20.9
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 5.3e-07 60.8 199 24.1
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 2.6e-06 58.5 198 23.2
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 3.4e-06 58.2 199 23.6
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 3.4e-06 58.2 199 23.1
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 4.5e-06 57.8 198 23.2
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 4.5e-06 57.8 199 22.6
HanXRQChr14g0440391 Helianthus annuus HOM05D000891 ORTHO05D000761 5.9e-06 57.4 283 23.7
AagrBONN_evm.TU.Sc2ySwM_228.1578 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.7e-06 57.0 399 22.6


User provided reference genes

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