Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.5e-186 656.0 322 100.0
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 2.3e-163 578.9 364 81.9
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.7e-158 562.8 371 77.9
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.2e-154 550.1 359 78.6
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 7.6e-154 547.4 367 76.8
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.7e-153 546.2 371 76.3
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.8e-153 545.0 366 76.8
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 1.4e-152 543.1 340 81.2
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.9e-152 542.7 367 76.3
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 7.8e-151 537.3 371 74.1
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 1.3e-150 536.6 370 75.4
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.9e-150 535.0 367 74.7
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 3.9e-150 535.0 367 74.7
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 8.7e-150 533.9 367 74.4
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 3.3e-149 531.9 362 75.7
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 2.8e-148 528.9 374 73.8
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.8e-148 528.9 373 74.0
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 4.8e-148 528.1 400 69.2
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 6.2e-148 527.7 371 72.5
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.1e-147 526.9 369 72.6
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.6e-146 522.3 373 72.7
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 5.8e-146 521.2 381 71.1
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 2.2e-145 519.2 338 77.2
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 2.9e-145 518.8 367 72.5
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 4.9e-145 518.1 371 70.9
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 4.9e-145 518.1 367 73.3
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 8.4e-145 517.3 364 73.1
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 8.4e-145 517.3 368 72.3
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.1e-144 516.9 369 72.6
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 1.9e-144 516.2 362 73.5
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 2.4e-144 515.8 360 73.6
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 3.2e-144 515.4 367 73.0
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 4.2e-144 515.0 369 72.6
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 4.2e-144 515.0 368 72.8
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 4.2e-144 515.0 371 71.2
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 5.4e-144 514.6 366 72.4
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.6e-143 513.1 367 71.1
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.1e-143 512.7 369 72.6
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.3e-142 510.0 368 71.5
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.3e-142 510.0 364 72.8
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.3e-142 509.2 372 70.7
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 3.0e-142 508.8 359 73.0
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 3.0e-142 508.8 400 67.2
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.5e-141 505.8 368 71.5
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 2.5e-141 505.8 373 71.6
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 7.3e-141 504.2 368 71.2
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 7.3e-141 504.2 370 70.8
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.3e-140 503.4 369 69.9
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 2.1e-140 502.7 370 70.0
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 2.8e-140 502.3 362 70.7
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.8e-140 502.3 370 71.1
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 2.8e-140 502.3 370 69.7
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.6e-140 501.9 343 76.1
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 4.8e-140 501.5 362 70.4
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 5.3e-139 498.0 355 72.7
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 9.0e-139 497.3 319 79.3
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 9.0e-139 497.3 427 62.1
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 1.7e-137 493.0 386 66.8
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 2.2e-137 492.7 366 70.2
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.1e-136 490.3 378 66.9
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 2.4e-136 489.2 396 65.2
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 7.1e-136 487.6 365 69.9
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 3.5e-135 485.3 367 68.4
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 4.6e-135 485.0 387 66.4
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 6.7e-134 481.1 380 68.4
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.9e-133 479.6 327 73.7
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.5e-133 479.2 379 66.2
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 4.3e-133 478.4 332 71.7
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 1.3e-132 476.9 362 68.8
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 1.6e-132 476.5 407 62.2
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 2.1e-132 476.1 357 69.2
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 3.7e-132 475.3 411 61.8
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 3.7e-132 475.3 348 70.1
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.8e-132 474.9 362 67.4
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 4.8e-132 474.9 362 67.4
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 2.4e-131 472.6 366 67.5
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 1.2e-130 470.3 355 68.2
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.2e-130 470.3 378 66.4
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 1.5e-130 469.9 380 67.4
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 2.0e-130 469.5 336 71.1
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 2.6e-130 469.2 356 68.8
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 2.2e-129 466.1 365 65.5
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 8.4e-129 464.2 370 65.9
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.6e-127 459.9 461 56.2
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 4.6e-127 458.4 322 71.1
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 6.0e-127 458.0 325 72.6
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.1e-124 449.5 357 66.7
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.5e-122 443.4 320 70.6
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.0e-118 430.6 389 60.2
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 3.9e-118 428.7 339 66.4
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 5.7e-117 424.9 315 70.5
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 6.9e-115 417.9 285 74.0
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 4.5e-114 415.2 349 59.9
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.0e-113 414.1 352 59.7
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 3.8e-113 412.1 363 62.5
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 8.5e-113 411.0 366 62.0
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 3.6e-111 405.6 316 66.1
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 3.0e-110 402.5 328 61.3
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 3.9e-102 375.6 332 56.9
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 8.2e-100 367.9 318 58.8
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 4.1e-99 365.5 208 87.0
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.7e-92 343.6 306 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 2.2e-92 343.2 261 66.3
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 2.7e-90 336.3 337 50.1
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 1.3e-89 334.0 199 82.9
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 5.0e-89 332.0 201 81.6
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 5.0e-89 332.0 201 81.6
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 2.5e-88 329.7 345 51.3
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.4e-86 323.9 191 83.2
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 3.0e-86 322.8 206 78.6
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 2.2e-84 316.6 351 52.7
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 4.8e-84 315.5 208 77.9
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.4e-83 313.2 238 68.1
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.2e-82 310.8 204 77.9
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.7e-76 289.3 252 61.5
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 3.4e-69 266.2 457 37.4
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 2.3e-65 253.4 322 47.5
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 9.5e-56 221.5 203 59.1
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 5.4e-51 205.7 115 83.5
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.5e-48 196.8 115 82.6
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 6.2e-47 192.2 114 79.8
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 8.9e-46 188.3 174 59.2
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 2.9e-44 183.3 120 73.3
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 4.9e-44 182.6 235 48.1
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 7.8e-42 175.3 176 56.8
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.5e-40 170.2 101 80.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 1.2e-39 167.9 94 81.9
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 2.6e-37 160.2 83 91.6
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.9e-32 144.1 132 58.3
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 1.5e-29 134.4 77 89.6
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 6.7e-25 119.0 69 79.7
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.1e-22 111.7 69 76.8
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 3.8e-12 76.6 54 70.4
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 4.9e-12 76.3 77 53.2
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 6.5e-12 75.9 93 49.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.3e-09 68.2 34 82.4
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 5.1e-09 66.2 31 90.3
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 5.7e-08 62.8 43 69.8
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 8.2e-07 58.9 38 71.1
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 8.2e-07 58.9 38 71.1
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.4e-06 57.4 57 56.1
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.9e-06 55.8 38 71.1


User provided reference genes

Program Settings