Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 5.4e-111 404.4 220 100.0
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 4.6e-86 321.6 220 80.5
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 5.0e-64 248.4 209 69.9
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 7.9e-54 214.5 208 58.2
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 7.9e-54 214.5 208 58.2
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 1.8e-53 213.4 209 59.8
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 1.5e-52 210.3 213 58.7
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 2.6e-52 209.5 217 56.7
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.3e-52 209.1 211 57.3
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 5.7e-52 208.4 208 57.2
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 9.7e-52 207.6 213 57.3
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.4e-50 203.0 212 54.2
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 2.6e-49 199.5 211 54.5
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 3.5e-49 199.1 207 58.0
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 4.5e-49 198.7 225 52.9
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.3e-48 197.2 207 58.9
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.7e-48 196.8 204 56.9
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.5e-47 193.7 207 58.0
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 1.5e-47 193.7 213 55.4
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.5e-47 193.0 212 56.1
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 7.2e-47 191.4 214 53.7
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 7.2e-47 191.4 206 60.7
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 9.4e-47 191.0 207 57.5
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 1.6e-46 190.3 216 53.2
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 3.6e-46 189.1 210 57.6
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.6e-46 189.1 210 55.2
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 6.1e-46 188.3 207 54.6
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 8.8e-45 184.5 212 57.5
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 2.0e-44 183.3 211 51.7
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.6e-44 183.0 203 53.2
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.6e-44 183.0 203 53.2
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 2.6e-44 183.0 209 52.6
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 3.3e-44 182.6 208 61.1
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 4.4e-44 182.2 209 55.0
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 7.5e-44 181.4 205 55.1
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.7e-44 181.0 191 56.0
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 2.8e-43 179.5 225 50.2
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 6.3e-43 178.3 210 55.7
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 8.2e-43 177.9 213 52.6
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 2.4e-42 176.4 204 55.9
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 5.3e-42 175.3 201 52.7
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 9.1e-42 174.5 210 52.4
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 9.1e-42 174.5 213 52.1
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-41 174.1 191 54.5
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.2e-41 174.1 200 53.0
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 5.9e-41 171.8 200 56.0
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 1.3e-40 170.6 213 53.1
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.9e-40 169.5 180 55.6
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 2.9e-40 169.5 211 49.8
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 3.8e-40 169.1 132 66.7
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.8e-40 169.1 196 53.1
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.5e-39 167.2 210 52.9
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 5.5e-39 165.2 228 48.7
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 5.5e-39 165.2 213 51.6
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 7.2e-39 164.9 223 49.3
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.2e-38 164.1 206 53.9
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.2e-38 164.1 212 48.6
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.6e-38 163.7 228 50.0
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 2.1e-38 163.3 204 53.9
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 2.7e-38 162.9 210 51.9
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.7e-38 162.9 212 48.6
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 3.6e-38 162.5 207 48.3
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 1.8e-37 160.2 104 75.0
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 1.8e-37 160.2 104 75.0
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 3.0e-37 159.5 201 53.7
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 3.0e-37 159.5 190 54.2
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 4.0e-37 159.1 104 74.0
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 4.0e-37 159.1 213 52.6
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 5.2e-37 158.7 200 53.0
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 6.8e-37 158.3 197 55.3
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 6.8e-37 158.3 218 48.6
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 8.8e-37 157.9 211 53.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.2e-36 157.5 213 52.1
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 2.0e-36 156.8 106 72.6
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 2.0e-36 156.8 106 72.6
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 2.6e-36 156.4 127 63.8
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 3.4e-36 156.0 134 64.2
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 4.4e-36 155.6 102 74.5
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 5.7e-36 155.2 207 48.8
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 7.5e-36 154.8 180 53.9
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 9.8e-36 154.5 209 50.7
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 9.8e-36 154.5 102 73.5
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.7e-35 153.7 204 51.5
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 2.2e-35 153.3 195 54.9
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.2e-35 153.3 205 50.7
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.8e-35 152.9 204 51.0
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 2.8e-35 152.9 125 65.6
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 3.7e-35 152.5 106 70.8
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 3.7e-35 152.5 106 70.8
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 4.8e-35 152.1 204 50.0
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 4.8e-35 152.1 135 57.8
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 8.3e-35 151.4 209 49.3
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 8.3e-35 151.4 206 51.9
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.1e-34 151.0 225 43.6
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 1.4e-34 150.6 211 46.4
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.4e-34 150.6 194 52.1
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.4e-34 150.6 194 52.1
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 1.4e-34 150.6 202 53.0
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.8e-34 150.2 129 63.6
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.8e-34 150.2 145 59.3
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.8e-34 150.2 147 57.8
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 4.1e-34 149.1 212 52.4
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.0e-34 148.3 211 48.8
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-33 147.5 193 49.7
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 2.7e-33 146.4 140 58.6
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 3.5e-33 146.0 146 54.8
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 4.5e-33 145.6 240 47.1
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 4.5e-33 145.6 205 48.8
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 5.9e-33 145.2 203 47.8
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 5.9e-33 145.2 222 44.1
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 2.2e-32 143.3 181 52.5
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 3.8e-32 142.5 204 46.6
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 1.1e-31 141.0 208 48.1
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 1.1e-31 141.0 180 54.4
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.1e-31 141.0 133 58.6
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.5e-31 140.6 270 39.3
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 1.5e-31 140.6 184 50.5
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 5.5e-31 138.7 159 56.0
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 5.5e-31 138.7 159 56.0
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 5.5e-31 138.7 218 43.1
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 5.5e-31 138.7 175 52.0
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.2e-30 137.5 129 61.2
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 1.6e-30 137.1 179 48.6
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 2.1e-30 136.7 180 47.2
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 4.7e-30 135.6 187 48.7
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 4.7e-30 135.6 106 66.0
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.0e-29 134.4 255 41.2
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.4e-29 134.0 227 43.6
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 1.8e-29 133.7 103 69.9
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.0e-29 132.9 164 51.2
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 3.0e-29 132.9 164 51.2
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.0e-29 132.5 113 61.9
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 4.0e-29 132.5 113 61.9
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 4.0e-29 132.5 160 50.6
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 5.2e-29 132.1 222 46.4
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.8e-29 131.3 197 48.7
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 8.8e-29 131.3 144 55.6
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-28 130.2 139 54.7
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 4.4e-28 129.0 131 57.3
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 5.7e-28 128.6 123 59.3
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 1.3e-27 127.5 165 49.7
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.7e-27 127.1 105 64.8
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 3.7e-27 125.9 190 48.4
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 3.7e-27 125.9 217 44.7
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 4.9e-27 125.6 201 48.8
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 4.9e-27 125.6 155 53.5
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 8.3e-27 124.8 252 38.1
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.4e-26 123.2 111 62.2
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.4e-26 123.2 111 62.2
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.1e-26 122.9 191 45.5
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.0e-26 121.7 197 46.7
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 2.7e-25 119.8 98 64.3
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 1.3e-24 117.5 180 51.1
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.7e-24 117.1 199 45.2
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 6.6e-24 115.2 59 86.4
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 8.6e-24 114.8 59 86.4
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 8.6e-24 114.8 59 86.4
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 1.5e-23 114.0 62 82.3
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.3e-23 112.5 58 89.7
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 5.6e-23 112.1 198 42.9
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 9.5e-23 111.3 62 83.9
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 6.1e-22 108.6 230 43.9
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 1.4e-21 107.5 162 46.9
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 6.8e-21 105.1 177 45.8
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 7.5e-20 101.7 210 38.1
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.4e-18 97.4 143 51.0
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.4e-18 97.4 144 42.4
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.8e-18 97.1 103 55.3
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.8e-18 97.1 103 55.3
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.4e-18 96.7 78 66.7
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.0e-16 89.0 180 45.6
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 8.0e-14 81.6 43 81.4
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 8.0e-14 81.6 200 38.0
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 8.0e-14 81.6 200 38.0
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 3.1e-13 79.7 86 54.7
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.9e-10 70.5 128 40.6
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 2.7e-09 66.6 61 59.0
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 8.6e-08 61.6 41 65.9
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 7.3e-07 58.5 77 48.1
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 1.6e-06 57.4 176 35.2
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 2.1e-06 57.0 80 45.0


User provided reference genes

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