Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1102400 Malus domestica HOM05D002341 ORTHO05D017369 1.9e-29 131.7 62 100.0
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 4.7e-12 73.9 39 87.2
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
C04p60530 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
C05p39590 Brassica napus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Cpa.g.sc67.48 Carica papaya HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CDE02G3147 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Os05g0163250 Oryza sativa ssp. japonica HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
unitig_747.g21300 Utricularia gibba HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 6.2e-12 73.6 39 84.6
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 8.1e-12 73.2 38 86.8
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 1.1e-11 72.8 39 82.1
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 1.1e-11 72.8 39 82.1
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.1e-11 72.8 39 82.1
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 1.1e-11 72.8 39 84.6
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 1.4e-11 72.4 39 82.1
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 1.4e-11 72.4 39 82.1
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.4e-11 72.4 39 82.1
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.4e-11 72.4 39 82.1
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 1.4e-11 72.4 39 82.1
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 1.4e-11 72.4 39 82.1
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 1.4e-11 72.4 39 82.1
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 2.3e-11 71.6 39 82.1
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 3.1e-11 71.2 38 84.2
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 6.8e-11 70.1 39 82.1
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 1.2e-10 69.3 37 81.1
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 1.2e-10 69.3 40 75.0
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 2.0e-10 68.6 39 79.5
Aqoxy180s004 Aquilegia oxysepala HOM05D002341 ORTHO05D017369 2.6e-10 68.2 39 79.5
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 2.6e-10 68.2 39 79.5
FAN09G0817 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.4e-10 67.4 49 65.3
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 5.8e-10 67.0 39 76.9
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 7.5e-10 66.6 39 79.5
FAN02G2298 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.5e-10 66.6 39 79.5
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 7.5e-10 66.6 39 79.5
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 9.8e-10 66.2 39 76.9
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 6.4e-09 63.5 39 69.2
HanXRQChr16g0508831 Helianthus annuus HOM05D002341 ORTHO05D003165 1.1e-08 62.8 39 74.4
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 3.5e-07 57.8 39 64.1
Carub.0007s2658 Capsella rubella HOM05D002341 ORTHO05D017369 7.8e-07 56.6 33 75.8


User provided reference genes

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