Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 1.5e-116 422.9 229 100.0
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 6.9e-85 317.8 220 80.5
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 3.7e-62 242.3 210 65.2
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.2e-54 216.5 209 60.3
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.2e-54 216.5 209 60.3
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 7.0e-53 211.5 209 60.3
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 9.1e-53 211.1 212 59.4
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 1.6e-52 210.3 209 59.3
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 3.5e-52 209.1 214 57.9
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 4.5e-52 208.8 214 57.9
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 2.3e-51 206.5 214 56.1
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.9e-50 203.4 214 54.2
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 4.2e-50 202.2 209 59.3
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 1.6e-49 200.3 219 56.6
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.6e-49 200.3 209 58.9
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.8e-49 199.5 217 56.2
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 3.6e-49 199.1 206 64.6
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.0e-48 197.6 209 58.4
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.4e-48 197.2 211 54.5
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 2.3e-48 196.4 208 55.3
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.2e-48 195.3 212 57.1
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.6e-47 193.0 204 56.4
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 5.7e-47 191.8 208 54.8
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 7.5e-47 191.4 214 54.7
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 2.8e-46 189.5 212 55.2
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 4.9e-46 188.7 209 60.8
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 4.9e-46 188.7 209 54.5
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 6.3e-46 188.3 205 56.6
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 8.3e-46 188.0 214 53.7
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 3.2e-45 186.0 205 54.6
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 3.2e-45 186.0 213 57.3
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 2.0e-44 183.3 212 58.5
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 4.5e-44 182.2 212 53.3
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 4.5e-44 182.2 212 53.3
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 4.5e-44 182.2 226 50.9
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 7.8e-44 181.4 192 57.8
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.7e-43 180.3 211 52.6
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 3.9e-43 179.1 221 52.0
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 5.0e-43 178.7 215 52.6
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 6.6e-43 178.3 208 53.4
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.5e-42 177.2 132 72.0
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.9e-42 176.8 207 53.6
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.3e-42 175.6 192 56.8
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.2e-41 174.1 200 54.5
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 2.1e-41 173.3 214 52.3
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 6.1e-41 171.8 214 51.4
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 1.0e-40 171.0 213 49.3
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 1.0e-40 171.0 209 51.2
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.4e-40 170.6 201 52.2
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 5.2e-40 168.7 210 55.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 8.9e-40 167.9 214 49.1
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.5e-39 167.2 214 49.1
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.0e-39 166.8 178 56.2
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 2.6e-39 166.4 191 54.5
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 5.8e-39 165.2 214 49.5
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 5.8e-39 165.2 205 51.7
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 7.5e-39 164.9 204 52.9
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 9.8e-39 164.5 114 74.6
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 9.8e-39 164.5 214 48.6
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.3e-38 164.1 206 49.0
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 2.2e-38 163.3 220 47.7
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 2.2e-38 163.3 103 78.6
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 2.9e-38 162.9 115 72.2
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 4.9e-38 162.2 103 77.7
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 4.9e-38 162.2 126 69.8
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 4.9e-38 162.2 201 51.2
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 4.9e-38 162.2 173 57.8
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 6.4e-38 161.8 125 68.8
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 8.3e-38 161.4 173 57.8
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 8.3e-38 161.4 134 66.4
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 8.3e-38 161.4 134 65.7
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.1e-37 161.0 208 51.4
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 2.4e-37 159.8 112 74.1
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 2.4e-37 159.8 206 52.9
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.4e-37 159.8 135 61.5
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 4.1e-37 159.1 112 73.2
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-36 157.5 119 69.7
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 1.2e-36 157.5 119 69.7
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-36 157.1 213 48.4
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.0e-36 156.8 194 53.6
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 2.7e-36 156.4 204 49.0
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 3.5e-36 156.0 107 75.7
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 3.5e-36 156.0 224 47.8
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.0e-36 155.2 203 48.8
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 7.8e-36 154.8 206 49.5
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.0e-35 154.5 224 47.3
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 1.0e-35 154.5 219 47.9
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 1.0e-35 154.5 147 58.5
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.7e-35 153.7 195 50.8
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.7e-35 153.7 195 50.8
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 3.9e-35 152.5 215 46.0
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 5.0e-35 152.1 211 47.9
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 6.6e-35 151.8 205 48.8
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 6.6e-35 151.8 206 49.0
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 8.6e-35 151.4 146 61.0
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 8.6e-35 151.4 149 59.7
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 8.6e-35 151.4 229 47.2
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.9e-34 150.2 236 44.9
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 2.5e-34 149.8 208 48.6
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 2.5e-34 149.8 172 54.1
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 3.3e-34 149.4 152 57.9
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 4.3e-34 149.1 170 54.1
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 4.3e-34 149.1 221 48.0
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 7.3e-34 148.3 205 47.8
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 9.5e-34 147.9 159 57.2
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 9.5e-34 147.9 205 48.3
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 9.5e-34 147.9 213 45.1
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.2e-33 147.5 244 45.5
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 2.8e-33 146.4 134 62.7
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.1e-32 144.4 171 53.8
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.1e-32 144.4 188 48.4
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 1.1e-32 144.4 187 51.9
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.4e-32 144.1 155 56.8
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 3.1e-32 142.9 145 58.6
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 5.2e-32 142.1 163 55.2
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 6.8e-32 141.7 131 61.8
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 6.8e-32 141.7 213 48.8
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 8.9e-32 141.4 110 66.4
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.5e-31 140.6 220 46.8
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 2.0e-31 140.2 113 68.1
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 2.0e-31 140.2 221 47.1
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 2.6e-31 139.8 195 50.3
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 2.6e-31 139.8 179 51.4
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 3.4e-31 139.4 198 49.0
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 3.4e-31 139.4 182 52.2
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 5.8e-31 138.7 154 53.9
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 3.7e-30 136.0 177 48.0
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 4.9e-30 135.6 141 56.7
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.4e-30 135.2 122 62.3
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 6.4e-30 135.2 122 62.3
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 6.4e-30 135.2 123 62.6
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 8.3e-30 134.8 123 63.4
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 1.1e-29 134.4 205 46.3
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.4e-29 134.0 154 55.8
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.4e-29 134.0 154 55.8
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 1.9e-29 133.7 157 54.8
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.9e-29 133.7 168 52.4
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.4e-29 133.3 210 45.2
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.4e-29 133.3 159 52.2
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.4e-29 133.3 159 52.2
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 3.2e-29 132.9 140 57.1
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.2e-29 132.9 159 53.5
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 7.1e-29 131.7 211 44.5
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 9.2e-29 131.3 184 48.4
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.1e-28 130.2 118 64.4
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.1e-28 130.2 118 64.4
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 7.8e-28 128.3 104 65.4
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 7.8e-28 128.3 231 41.1
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.5e-26 124.0 170 50.6
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.5e-26 124.0 162 51.9
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.5e-26 123.2 178 51.1
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.1e-25 120.2 126 55.6
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 4.7e-25 119.0 102 61.8
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.7e-25 119.0 179 48.0
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 3.1e-24 116.3 196 43.9
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 4.0e-24 115.9 104 58.7
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 4.0e-24 115.9 104 58.7
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 8.9e-24 114.8 199 43.7
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 1.5e-23 114.0 62 82.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 1.5e-23 114.0 183 44.8
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.4e-23 112.5 58 89.7
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 9.9e-23 111.3 62 83.9
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.9e-22 109.8 211 40.3
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 3.7e-22 109.4 153 48.4
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 4.1e-21 105.9 155 50.3
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 4.1e-21 105.9 155 47.1
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.6e-20 102.4 104 56.7
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.6e-20 102.4 104 56.7
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 5.1e-19 99.0 140 50.0
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.5e-18 96.7 99 58.6
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.4e-16 90.9 178 44.9
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 5.8e-15 85.5 120 50.0
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 8.4e-14 81.6 43 81.4
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 1.4e-13 80.9 86 57.0
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 9.3e-13 78.2 201 38.3
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 9.3e-13 78.2 201 38.3
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 2.8e-09 66.6 61 59.0
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 5.3e-08 62.4 74 52.7
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 9.0e-08 61.6 41 65.9
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 2.2e-06 57.0 142 38.7
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 2.2e-06 57.0 142 38.7


User provided reference genes

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