Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 3.6e-269 931.0 470 100.0
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 3.5e-200 701.8 476 73.7
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.3e-194 683.3 466 73.8
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.4e-193 679.9 466 73.2
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.4e-193 679.9 466 72.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 3.5e-192 675.2 466 70.6
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.5e-190 669.8 466 70.0
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 5.6e-190 667.9 466 70.8
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.4e-188 663.3 466 71.0
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 3.1e-188 662.1 468 69.7
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 5.2e-188 661.4 491 66.6
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.2e-187 660.2 468 69.2
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 4.4e-187 658.3 466 68.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 5.8e-187 657.9 466 69.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 7.6e-187 657.5 466 70.0
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 1.4e-185 653.3 466 69.1
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 1.4e-185 653.3 468 69.2
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 3.2e-185 652.1 466 69.5
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.2e-185 652.1 466 67.8
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 7.1e-185 651.0 466 69.3
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 1.6e-184 649.8 470 69.4
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.6e-184 649.8 466 69.5
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 2.7e-184 649.0 466 68.9
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 7.8e-184 647.5 468 67.9
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.0e-183 647.1 466 68.9
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 1.7e-183 646.4 466 67.2
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 1.7e-183 646.4 466 68.5
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.3e-183 646.0 466 69.5
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.9e-182 642.9 466 67.6
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.9e-182 642.9 466 68.5
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 2.5e-182 642.5 466 68.2
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 2.5e-182 642.5 466 67.8
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 5.6e-182 641.3 466 67.8
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 4.8e-181 638.3 466 67.8
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 1.4e-180 636.7 484 65.7
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.4e-180 636.0 466 66.7
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 4.0e-180 635.2 466 67.8
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.6e-179 632.5 466 68.7
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 4.5e-179 631.7 466 67.4
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 7.6e-179 630.9 466 65.9
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 1.3e-178 630.2 466 67.2
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.2e-178 629.4 466 65.5
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.9e-178 629.0 466 67.2
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 3.8e-178 628.6 466 66.3
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 6.4e-178 627.9 466 65.7
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 1.9e-177 626.3 465 66.7
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.4e-177 624.8 468 67.1
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 1.6e-176 623.2 466 64.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 2.1e-176 622.9 466 65.5
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 2.7e-176 622.5 468 64.1
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 3.5e-176 622.1 466 65.9
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.0e-176 621.3 468 64.1
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 7.9e-176 620.9 523 60.8
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 7.9e-176 620.9 468 64.1
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 1.3e-175 620.2 466 64.6
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.3e-175 619.4 468 63.9
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 2.3e-175 619.4 466 64.4
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.0e-175 619.0 468 63.5
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 6.7e-175 617.8 468 63.9
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 8.7e-175 617.5 467 67.2
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.3e-174 615.5 467 65.7
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.3e-173 613.6 466 66.1
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.6e-173 613.2 466 65.9
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 3.7e-173 612.1 466 65.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 3.7e-173 612.1 466 65.7
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 1.1e-172 610.5 466 66.1
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 1.1e-172 610.5 466 65.0
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 1.1e-172 610.5 467 64.2
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.1e-172 610.5 468 66.2
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 6.9e-172 607.8 463 64.1
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 9.0e-172 607.4 466 65.9
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 2.0e-171 606.3 467 64.9
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 5.8e-171 604.7 459 65.8
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.9e-170 602.4 468 64.3
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 3.8e-170 602.1 466 65.2
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 8.4e-170 600.9 466 65.7
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.7e-168 595.9 468 62.6
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 6.0e-168 594.7 467 64.0
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 6.0e-168 594.7 467 64.0
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.9e-168 594.3 466 63.1
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 1.3e-162 577.0 413 68.0
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 3.5e-160 568.9 413 68.3
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.8e-159 566.6 468 60.0
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 3.3e-158 562.4 414 67.4
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.4e-156 557.0 466 59.4
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 9.0e-156 554.3 466 57.7
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.0e-155 553.1 466 58.2
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 2.0e-155 553.1 466 57.5
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 2.0e-155 553.1 468 59.8
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 2.6e-155 552.7 466 57.7
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 2.6e-155 552.7 466 57.9
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 5.9e-155 551.6 466 57.5
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 5.9e-155 551.6 466 57.7
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 2.9e-154 549.3 466 59.2
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 5.0e-154 548.5 466 57.5
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 4.2e-153 545.4 466 56.2
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 4.2e-153 545.4 466 56.0
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 9.7e-150 534.3 466 55.6
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 3.7e-149 532.3 466 60.5
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.0e-147 526.6 465 59.8
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 1.0e-146 524.2 414 63.0
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-144 515.8 469 59.5
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-140 504.2 494 56.1
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 7.7e-139 498.0 398 62.3
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 1.9e-137 493.4 421 60.3
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 5.0e-130 468.8 413 55.2
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 9.4e-129 464.5 467 53.5
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-127 460.3 465 54.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 1.8e-127 460.3 465 50.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.3e-126 456.1 282 77.7
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 1.0e-122 444.5 335 65.1
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 2.9e-122 443.0 468 51.3
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 6.8e-119 431.8 470 47.9
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 2.4e-116 423.3 467 47.1
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.8e-108 397.1 459 46.0
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 4.1e-108 396.0 464 44.2
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.8e-104 383.3 466 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 2.1e-96 357.1 467 40.9
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 3.8e-77 293.1 204 67.2
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 8.4e-77 292.0 268 59.0
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 1.3e-69 268.1 190 66.3
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 5.1e-50 203.0 144 63.9
Glyma.01G142851 Glycine max HOM05D004484 ORTHO05D005370 1.4e-44 184.9 168 58.3
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 5.1e-42 176.4 132 62.9
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 8.2e-40 169.1 253 40.7
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 9.0e-39 165.6 116 69.0
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.5e-38 164.9 184 50.5
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.6e-38 164.1 202 48.0
SHI38094 Sapria himalayana HOM05D004484 ORTHO05D005370 1.4e-36 158.3 167 53.3
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 7.9e-35 152.5 105 68.6
TPR.G22633 Trifolium pratense HOM05D004484 ORTHO05D005370 1.3e-32 145.2 92 72.8
CAN.G205.22 Capsicum annuum HOM05D004484 ORTHO05D005370 3.1e-31 140.6 89 73.0
MCO15G158 Micromonas commoda HOM05D004484 ORTHO05D005370 6.5e-29 132.9 436 28.9
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 6.5e-29 132.9 201 37.3
arahy.Tifrunner.gnm1.ann1.47H85H Arachis hypogaea HOM05D004484 ORTHO05D005370 9.7e-25 119.0 196 39.3
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 2.2e-24 117.9 82 68.3
CAN.G279.6 Capsicum annuum HOM05D004484 ORTHO05D005370 1.1e-20 105.5 72 68.1
SHI38995 Sapria himalayana HOM05D004484 ORTHO05D005370 2.4e-15 87.8 74 62.2
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 2.0e-14 84.7 168 32.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 4.5e-14 83.6 168 32.7
PRCOL_00002704 Prasinoderma coloniale HOM05D004484 ORTHO05D005370 5.9e-14 83.2 261 29.1
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 5.0e-13 80.1 188 33.5
Glyma.06G243934 Glycine max HOM05D004484 ORTHO05D005370 1.1e-12 79.0 82 51.2
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 3.2e-12 77.4 133 36.8
Glyma.06G244302 Glycine max HOM05D004484 ORTHO05D005370 4.2e-12 77.0 158 38.0
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 4.0e-10 70.5 62 56.5
Os03g0856200 Oryza sativa ssp. japonica HOM05D004484 ORTHO05D005370 1.4e-07 62.0 45 66.7
Aa31LG10G5660 Aethionema arabicum HOM05D004484 ORTHO05D005370 9.1e-07 59.3 47 55.3
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 2.0e-06 58.2 52 50.0
unitig_749.g13781 Utricularia gibba HOM05D004484 ORTHO05D005370 2.0e-06 58.2 46 56.5
Cre10.g423800 Chlamydomonas reinhardtii HOM05D004484 ORTHO05D005370 4.5e-06 57.0 308 23.1


User provided reference genes

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