Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 2.8e-211 738.4 387 100.0
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.3e-139 497.7 593 54.3
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.3e-139 497.7 593 54.3
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.0e-136 490.7 548 55.8
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 4.2e-135 485.3 540 55.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 4.2e-135 485.3 546 54.0
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 5.7e-132 474.9 550 52.9
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.8e-131 472.6 547 53.4
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.3e-131 471.1 546 53.5
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 1.8e-130 469.9 546 52.7
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 2.4e-130 469.5 561 53.5
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 9.2e-130 467.6 462 60.4
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.7e-128 463.4 543 52.9
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 5.6e-127 458.4 545 52.7
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.2e-126 457.2 545 52.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.1e-126 456.4 542 53.5
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.4e-125 453.8 549 51.2
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.8e-125 453.4 542 53.3
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.0e-125 452.6 510 55.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 5.2e-125 451.8 556 52.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.6e-124 449.5 544 51.3
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.9e-123 446.0 546 51.1
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.9e-123 446.0 546 50.5
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 4.9e-123 445.3 545 51.0
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.4e-122 443.7 510 53.7
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 9.2e-122 441.0 529 53.1
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.0e-120 437.6 547 49.7
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.9e-120 435.6 546 51.1
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.0e-120 435.3 542 50.2
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 3.3e-119 432.6 550 49.8
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 5.6e-119 431.8 555 51.2
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 9.5e-119 431.0 547 51.7
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 1.2e-118 430.6 542 50.7
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 3.6e-118 429.1 544 50.0
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 4.7e-118 428.7 502 53.6
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 6.2e-118 428.3 578 48.8
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 1.1e-117 427.6 546 49.6
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 5.2e-117 425.2 544 50.7
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 8.9e-117 424.5 540 50.7
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.5e-116 423.7 553 51.0
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.5e-116 423.7 529 52.0
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-116 422.5 544 49.8
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.3e-115 420.6 538 50.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 6.4e-115 418.3 555 50.6
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.2e-114 416.0 544 50.4
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 4.1e-114 415.6 546 49.3
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.3e-112 409.8 546 49.6
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 5.6e-111 405.2 546 49.5
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 5.6e-111 405.2 544 48.7
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.1e-110 403.3 552 48.9
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.1e-110 403.3 531 49.9
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.8e-110 402.9 551 47.9
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 2.8e-110 402.9 558 47.7
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.6e-110 402.5 542 47.8
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 3.6e-110 402.5 544 47.1
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 4.7e-110 402.1 544 48.5
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.2e-110 401.7 553 49.0
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-109 400.6 559 47.8
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.4e-109 400.6 542 48.7
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.4e-109 400.6 549 47.5
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.2e-109 398.7 583 46.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.2e-108 397.5 553 48.6
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.4e-108 396.0 539 48.1
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.3e-107 394.0 553 47.6
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.1e-106 391.0 548 46.2
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 3.2e-106 389.4 545 48.1
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.6e-105 387.1 558 46.4
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 6.0e-105 385.2 569 45.2
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.7e-104 383.6 544 47.4
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.7e-104 383.6 516 48.8
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 3.3e-103 379.4 544 46.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.3e-103 379.4 545 46.1
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.3e-103 379.0 516 48.8
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-102 376.7 576 44.8
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 8.9e-101 371.3 553 44.3
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-100 370.9 544 45.8
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.6e-100 369.8 531 47.8
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 6.4e-99 365.2 549 45.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.6e-97 360.5 545 44.8
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.7e-96 357.1 543 46.8
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.3e-95 352.8 554 41.9
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 5.6e-95 352.1 514 45.7
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.2e-94 348.6 531 45.8
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.8e-93 347.1 550 43.6
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.8e-93 347.1 493 47.9
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 3.1e-93 346.3 548 43.6
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 9.0e-93 344.7 547 44.8
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 9.0e-93 344.7 545 44.8
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 9.0e-93 344.7 547 44.8
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.2e-92 344.4 564 42.0
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.6e-92 343.2 540 45.4
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.3e-91 340.9 551 44.1
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.7e-91 340.5 553 43.8
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.9e-91 339.7 506 46.8
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 6.4e-91 338.6 545 44.2
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 6.4e-91 338.6 535 45.4
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 8.4e-91 338.2 546 44.1
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.1e-90 337.8 506 49.2
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.9e-90 337.0 527 45.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 2.4e-90 336.7 486 48.1
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.2e-90 336.3 505 46.5
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.1e-89 333.6 543 42.4
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 5.1e-88 328.9 572 40.6
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.1e-87 327.8 527 43.8
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 7.3e-87 325.1 517 44.1
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-86 324.3 519 44.9
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.1e-82 311.2 324 53.4
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 5.4e-82 308.9 543 40.5
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.7e-81 306.6 524 42.9
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 7.9e-81 305.1 546 39.9
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 9.6e-79 298.1 482 45.9
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 4.0e-77 292.7 839 32.2
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.8e-76 288.9 546 38.8
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 4.9e-75 285.8 468 44.4
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 4.2e-74 282.7 531 40.9
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 4.2e-74 282.7 532 41.4
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 5.5e-74 282.3 548 38.1
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 3.5e-73 279.6 506 40.9
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 2.8e-70 270.0 504 40.7
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 2.8e-70 270.0 504 40.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.1e-69 268.1 463 42.3
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.8e-69 267.3 318 47.2
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.0e-68 263.8 600 35.3
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 7.6e-68 261.9 492 40.9
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.5e-66 256.9 496 40.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.6e-65 254.2 550 34.2
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.7e-65 253.4 521 37.4
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 3.9e-64 249.6 434 42.9
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.1e-64 249.2 514 37.7
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.7e-64 248.4 521 37.0
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-63 248.1 520 37.3
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.5e-63 246.9 158 73.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-62 243.8 514 37.4
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 4.8e-62 242.7 264 59.1
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 5.5e-58 229.2 535 34.2
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 6.1e-57 225.7 240 63.3
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.8e-56 224.2 216 66.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 5.1e-56 222.6 517 35.8
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 9.7e-55 218.4 275 55.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.9e-53 212.2 415 39.5
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 4.7e-49 199.5 271 52.4
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 5.5e-42 176.0 388 36.9
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.6e-41 174.5 155 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.7e-41 173.7 311 33.8
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 8.8e-40 168.7 175 59.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 9.7e-39 165.2 223 49.8
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.5e-36 156.4 101 71.3
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.4e-29 134.0 189 53.4
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.1e-26 125.2 201 39.3
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 5.5e-26 122.9 216 47.2
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 6.3e-22 109.4 136 41.2
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-21 105.5 101 50.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.1e-18 98.6 73 74.0
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.1e-18 98.6 73 74.0
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 2.5e-18 97.4 100 63.0
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 4.2e-18 96.7 112 56.2
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.2e-17 95.1 167 46.1
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 3.0e-16 90.5 54 66.7
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 2.6e-15 87.4 103 57.3
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.3e-14 85.1 59 67.8
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 2.8e-14 84.0 49 79.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.1e-13 80.1 98 51.0
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 9.2e-13 79.0 75 54.7
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.2e-12 78.6 178 39.3
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.6e-12 78.2 177 38.4
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.7e-12 77.4 43 88.4
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.3e-11 75.1 99 51.5
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 9.5e-10 68.9 84 53.6
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.6e-09 67.0 251 33.9
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 3.6e-09 67.0 64 57.8
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.1e-09 66.2 41 82.9
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 8.0e-09 65.9 39 84.6
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.0e-08 65.5 122 31.1
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 1.2e-07 62.0 96 40.6
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.5e-07 61.6 54 61.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 9.8e-07 58.9 48 68.8


User provided reference genes

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