Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 9.4e-261 903.3 556 100.0
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 1.1e-184 650.6 542 75.5
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.7e-183 646.0 543 71.8
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 5.1e-182 641.7 539 69.6
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 4.0e-179 632.1 540 68.9
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-178 630.6 542 70.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 2.9e-177 625.9 544 74.4
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.5e-175 619.0 543 69.8
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.9e-173 613.2 545 71.0
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.9e-168 596.7 545 67.7
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 7.9e-167 591.3 544 67.1
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 6.7e-166 588.2 566 66.6
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.1e-165 587.4 545 65.5
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 4.5e-162 575.5 544 65.3
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 4.5e-162 575.5 542 67.3
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.0e-161 574.3 545 74.7
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 5.0e-161 572.0 546 66.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.4e-160 570.5 555 64.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.8e-158 563.5 547 65.4
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 6.7e-158 561.6 555 63.6
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 9.7e-157 557.8 541 68.8
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.6e-156 557.0 546 62.5
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.4e-155 553.1 555 64.1
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.5e-154 550.4 545 63.7
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 7.7e-154 548.1 546 61.0
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 2.9e-153 546.2 545 66.6
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 5.0e-153 545.4 545 63.3
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.2e-152 542.7 547 60.9
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.1e-151 540.0 544 64.9
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-151 539.7 556 63.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.8e-150 537.0 542 65.7
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 3.9e-150 535.8 550 62.0
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.5e-149 533.9 545 62.0
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 7.4e-149 531.6 546 59.3
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 2.8e-148 529.6 542 66.8
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 6.9e-147 525.0 543 61.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.3e-145 520.8 541 65.1
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.4e-144 517.3 550 58.2
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.6e-143 512.7 588 57.8
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.6e-143 512.7 588 57.8
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 7.9e-143 511.5 577 55.6
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.9e-143 511.5 542 59.4
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.0e-142 511.1 544 66.9
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.4e-142 510.8 545 58.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.0e-142 509.6 544 60.5
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 5.2e-142 508.8 546 60.8
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.1e-141 507.7 543 59.1
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.7e-141 505.4 588 60.5
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 9.7e-141 504.6 546 62.8
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.3e-140 504.2 558 55.9
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.7e-140 503.8 553 59.5
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.7e-140 503.8 553 59.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 2.8e-140 503.1 547 60.7
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 8.2e-140 501.5 544 61.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 8.2e-140 501.5 550 59.1
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.1e-139 501.1 563 64.5
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 3.1e-139 499.6 585 58.1
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.2e-138 497.7 563 62.0
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.6e-138 496.5 543 59.3
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.5e-138 496.1 548 56.6
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.9e-138 495.4 553 58.8
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 5.0e-137 492.3 564 67.2
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 6.5e-137 491.9 498 63.5
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.2e-135 487.6 558 60.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.6e-135 486.1 551 56.3
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 8.0e-135 485.0 551 60.3
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.4e-134 484.2 543 64.5
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.3e-134 483.4 547 61.6
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.2e-133 481.1 578 55.5
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 3.3e-133 479.6 556 57.4
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 9.7e-133 478.0 532 57.9
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.7e-132 477.2 514 61.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-132 477.2 536 54.9
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 3.5e-130 469.5 547 57.2
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.5e-130 469.5 552 58.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-129 466.8 581 58.5
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 2.1e-127 460.3 548 56.4
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 3.0e-126 456.4 550 64.9
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 5.2e-126 455.7 546 57.3
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 3.4e-125 453.0 543 57.3
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 3.4e-125 453.0 530 57.7
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 2.2e-124 450.3 547 58.9
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 1.2e-122 444.5 515 57.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.6e-122 444.1 562 55.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 4.5e-122 442.6 506 57.9
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 1.3e-121 441.0 554 51.8
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.7e-121 440.7 506 57.7
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 5.5e-120 435.6 539 53.1
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 9.5e-120 434.9 545 56.7
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 2.1e-119 433.7 546 57.7
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.7e-119 432.6 534 54.5
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 6.1e-119 432.2 543 57.5
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.2e-117 427.9 554 51.3
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.0e-117 427.2 532 58.3
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.0e-117 427.2 518 59.7
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 9.8e-117 424.9 544 52.9
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.7e-116 424.1 539 55.1
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.2e-114 417.9 361 65.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-114 417.9 547 53.4
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.2e-114 417.9 545 53.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.2e-114 417.9 547 53.4
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 5.9e-114 415.6 468 64.5
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.7e-113 414.1 545 53.0
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 2.9e-113 413.3 547 52.8
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 8.6e-113 411.8 589 49.2
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.9e-112 410.6 552 53.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.1e-111 407.1 545 50.6
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 7.5e-109 398.7 489 54.8
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 8.3e-108 395.2 545 48.1
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 9.2e-107 391.7 466 61.8
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 2.7e-106 390.2 544 49.6
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 2.5e-104 383.6 519 61.7
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 9.5e-104 381.7 502 59.0
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.3e-102 377.1 533 48.6
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.2e-98 364.8 528 47.9
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 2.7e-98 363.6 533 47.7
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 2.7e-98 363.6 840 37.1
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.7e-97 360.9 489 50.7
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 8.9e-94 348.6 551 46.8
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 2.6e-93 347.1 531 47.1
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 2.6e-93 347.1 531 47.1
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 9.9e-93 345.1 195 84.1
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.3e-92 344.7 258 67.4
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.1e-91 339.7 582 43.5
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 4.6e-90 336.3 552 46.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.6e-88 329.3 545 45.0
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-87 327.4 545 45.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 6.2e-87 325.9 551 42.6
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 1.8e-86 324.3 544 44.5
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 2.4e-86 323.9 545 43.1
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.2e-85 321.6 543 41.3
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-85 321.2 533 45.0
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.4e-85 320.1 533 44.8
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.1e-83 315.1 413 57.4
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.1e-83 315.1 545 42.8
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.6e-82 311.2 427 52.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.0e-69 267.7 444 48.0
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 9.3e-67 258.8 366 54.4
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.6e-66 256.5 255 53.3
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.9e-64 251.1 366 58.5
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 3.2e-59 233.8 369 61.2
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.5e-58 230.3 369 37.7
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 2.3e-57 227.6 325 55.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.9e-57 226.9 308 51.0
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.0e-49 200.7 502 37.6
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-36 158.3 101 70.3
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.2e-35 152.9 243 48.6
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-28 130.6 203 40.9
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.5e-24 118.6 211 46.0
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 4.4e-24 117.1 312 37.2
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 9.7e-24 115.9 269 38.7
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-23 115.5 109 69.7
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-22 111.7 112 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.5e-21 107.1 140 42.1
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.3e-20 105.5 204 47.1
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 4.2e-19 100.5 51 88.2
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 9.4e-19 99.4 76 75.0
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.4e-19 99.4 76 75.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.1e-18 98.2 98 61.2
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 8.0e-18 96.3 194 43.8
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.2e-16 92.4 54 74.1
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.6e-16 91.3 207 38.6
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.6e-16 91.3 99 46.5
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-15 89.0 203 42.9
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.4e-14 85.5 111 52.3
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 3.1e-14 84.3 56 78.6
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 5.3e-14 83.6 114 52.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.0e-12 79.3 100 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.7e-12 78.6 237 34.2
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.5e-11 74.7 103 50.5
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.6e-10 72.0 59 59.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.0e-09 67.8 70 51.4
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.0e-09 67.4 67 50.7
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.4e-08 63.9 122 32.8
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 5.7e-08 63.5 178 37.6
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 1.3e-07 62.4 147 31.3
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.7e-07 62.0 53 58.5
CBR_g38329 Chara braunii HOM05D003850 ORTHO05D004515 1.8e-06 58.5 96 39.6


User provided reference genes

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