Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 0.0e+00 1588.5 790 100.0
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 0.0e+00 1198.7 755 79.6
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 0.0e+00 1192.6 752 80.3
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 0.0e+00 1182.9 748 78.7
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1172.9 731 79.2
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 0.0e+00 1162.1 730 79.3
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 0.0e+00 1156.0 771 75.1
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 0.0e+00 1143.3 731 77.8
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 0.0e+00 1122.8 736 74.6
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 0.0e+00 1090.1 735 74.1
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 4.1e-302 1041.2 699 70.5
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 3.5e-301 1038.1 720 68.6
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 3.2e-299 1031.6 691 70.9
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 1.2e-298 1029.6 692 70.7
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 1.8e-297 1025.8 763 67.6
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 1.8e-297 1025.8 736 69.2
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 9.8e-296 1020.0 726 67.6
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 9.8e-296 1020.0 738 67.9
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 2.2e-295 1018.8 745 67.5
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 3.1e-294 1015.0 734 68.1
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 3.8e-292 1008.1 705 69.4
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 1.4e-289 999.6 743 65.8
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 8.9e-289 996.9 697 68.4
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 6.3e-287 990.7 758 64.4
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 9.2e-286 986.9 705 67.9
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.2e-285 986.5 705 67.9
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 7.8e-285 983.8 739 66.3
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 6.6e-284 980.7 650 70.6
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 1.1e-283 979.9 755 64.6
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 4.3e-283 978.0 782 62.9
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 1.2e-282 976.5 745 65.2
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 4.7e-282 974.5 746 63.9
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 1.0e-281 973.4 752 64.9
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 6.8e-281 970.7 754 64.5
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 6.8e-281 970.7 753 63.7
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 8.9e-281 970.3 751 64.0
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.0e-280 969.1 757 64.5
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.7e-279 966.1 740 64.1
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 2.2e-279 965.7 770 62.3
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.7e-279 964.9 746 63.4
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 1.2e-277 959.9 756 64.2
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 7.8e-277 957.2 771 62.8
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 1.3e-276 956.4 681 67.5
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.5e-275 953.0 774 61.9
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 1.6e-274 949.5 714 64.4
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 8.1e-274 947.2 611 77.4
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 1.2e-272 943.3 753 62.0
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 7.5e-272 940.6 699 64.7
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.9e-270 936.0 767 60.5
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 7.1e-270 934.1 737 63.1
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 8.6e-268 927.2 739 62.8
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 2.8e-266 922.2 773 59.9
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.8e-266 922.2 691 66.6
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 1.2e-264 916.8 740 61.4
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 5.8e-264 914.4 722 64.1
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.1e-262 910.2 728 61.4
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 4.1e-262 908.3 700 63.1
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.6e-261 906.4 726 61.3
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 2.5e-259 899.0 762 59.6
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 4.3e-259 898.3 762 59.2
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 5.6e-259 897.9 697 62.0
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 4.7e-258 894.8 686 63.3
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 5.2e-257 891.3 708 61.3
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 1.5e-256 889.8 731 60.3
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 2.6e-256 889.0 715 60.1
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 2.2e-255 885.9 654 64.4
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 3.2e-254 882.1 691 60.6
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 2.3e-252 875.9 759 57.2
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 6.6e-252 874.4 717 59.6
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 4.3e-251 871.7 739 59.8
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 7.3e-251 870.9 678 61.2
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 7.3e-251 870.9 678 61.2
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 7.3e-251 870.9 678 61.2
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 1.6e-250 869.8 691 59.9
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 9.0e-249 864.0 677 61.0
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 4.9e-247 858.2 757 56.5
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 1.1e-246 857.1 771 56.2
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 2.4e-246 855.9 757 56.7
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 9.3e-246 854.0 763 57.7
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 7.9e-245 850.9 749 57.0
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 7.9e-245 850.9 736 58.4
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 1.2e-237 827.0 649 61.5
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 7.9e-237 824.3 722 56.1
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.8e-236 823.2 741 55.3
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 3.9e-236 822.0 609 65.8
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 5.1e-236 821.6 649 61.3
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 8.7e-236 820.8 734 55.2
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 9.0e-233 810.8 806 51.5
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 8.4e-231 804.3 560 68.9
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 7.9e-229 797.7 745 54.5
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 5.1e-228 795.0 771 53.0
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 6.3e-226 788.1 729 53.8
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 9.0e-225 784.3 796 55.8
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 3.4e-224 782.3 683 56.2
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 2.2e-223 779.6 606 61.7
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.4e-222 776.9 697 54.1
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.8e-210 735.3 534 67.0
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 8.5e-199 698.0 742 49.7
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 1.0e-180 637.9 678 47.5
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 3.3e-174 616.3 512 59.4
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.0e-172 611.3 650 49.1
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 1.3e-143 514.6 391 62.9
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 6.2e-141 505.8 455 55.6
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-126 458.4 496 49.8
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.7e-120 437.2 634 43.1
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 1.6e-112 411.4 296 70.9
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.9e-110 404.4 473 47.8
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.7e-96 357.5 335 57.6
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 2.6e-94 350.9 677 31.9
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.3e-82 312.0 306 53.6
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 1.0e-79 302.4 356 49.7
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 6.3e-77 293.1 645 29.0
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.6e-67 261.9 769 26.3
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 2.7e-67 261.2 663 25.9
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.2e-54 219.2 679 25.0
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 2.7e-51 208.0 158 63.9
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.9e-51 206.8 165 60.6
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.2e-40 172.6 708 22.5
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 4.0e-39 167.5 177 51.4
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.5e-33 149.1 198 42.4
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 5.2e-23 114.0 150 45.3
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 1.3e-16 92.8 630 20.2
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 6.2e-16 90.5 688 18.8
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.6e-14 85.1 51 74.5
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 4.9e-13 80.9 76 51.3
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 4.2e-12 77.8 51 68.6
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 1.0e-10 73.2 58 63.8
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 2.1e-08 65.5 360 21.4
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 1.1e-07 63.2 340 21.5
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 2.4e-07 62.0 177 24.9
SEGI_09142 Sequoiadendron giganteum HOM05D002649 ORTHO05D002838 4.0e-07 61.2 391 22.0
FAN07G0233 Fragaria x ananassa HOM05D008684 ORTHO05D010796 6.9e-07 60.5 479 18.2
Manes.01G273600 Manihot esculenta HOM05D000300 ORTHO05D000383 1.2e-06 59.7 160 28.1
Manes.08G026500 Manihot esculenta HOM05D000001 ORTHO05D000003 1.2e-06 59.7 270 24.4
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 2.6e-06 58.5 226 24.3
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 4.5e-06 57.8 177 25.4
VMungo0331G0487 Vigna mungo HOM05D000300 ORTHO05D000383 4.5e-06 57.8 189 27.5
GSVIVG01025389001 Vitis vinifera HOM05D000001 ORTHO05D010412 4.5e-06 57.8 179 26.3
Ca_14795_v3 Cicer arietinum L. HOM05D000300 ORTHO05D000383 5.8e-06 57.4 137 29.9
Phvul.009G219100 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 5.8e-06 57.4 338 21.3
vmacro13514 Vaccinium macrocarpon HOM05D000300 ORTHO05D000383 5.8e-06 57.4 134 29.9
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 7.6e-06 57.0 202 24.8
Manes.05G056400 Manihot esculenta HOM05D000300 ORTHO05D000383 7.6e-06 57.0 153 26.8
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 7.6e-06 57.0 177 24.9
Glyma.03G108100 Glycine max HOM05D000300 ORTHO05D000383 9.9e-06 56.6 160 27.5


User provided reference genes

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