Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 4.8e-81 304.7 180 100.0
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 1.3e-46 190.3 185 57.8
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 7.2e-45 184.5 188 59.6
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 1.0e-43 180.6 194 55.7
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.3e-43 179.5 188 57.4
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 3.0e-43 179.1 198 57.6
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 6.7e-43 177.9 188 56.9
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 6.7e-43 177.9 192 54.2
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 1.2e-42 177.2 196 58.2
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 1.2e-42 177.2 192 54.2
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 2.6e-42 176.0 193 54.9
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 3.3e-42 175.6 189 55.6
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 3.3e-42 175.6 193 52.3
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.7e-42 174.9 193 52.3
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 7.5e-42 174.5 193 57.0
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 7.5e-42 174.5 193 54.9
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 1.3e-41 173.7 192 54.2
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 4.8e-41 171.8 188 56.4
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 8.2e-41 171.0 199 53.3
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 4.1e-40 168.7 206 52.9
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 7.0e-40 167.9 188 54.8
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 7.0e-40 167.9 186 65.6
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.6e-39 166.8 186 52.7
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 4.5e-39 165.2 252 46.0
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 5.9e-39 164.9 206 53.9
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 1.3e-38 163.7 191 61.3
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 3.8e-38 162.2 193 50.8
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 1.1e-37 160.6 189 55.0
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 3.2e-37 159.1 185 54.1
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.2e-36 157.1 193 52.3
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.6e-36 156.8 209 50.2
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 2.7e-36 156.0 187 60.4
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 4.7e-36 155.2 192 50.5
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 6.1e-36 154.8 189 52.4
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 1.0e-35 154.1 209 46.4
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 1.4e-35 153.7 187 51.9
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.8e-35 153.3 189 53.4
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 4.0e-35 152.1 187 51.3
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 2.0e-34 149.8 198 48.0
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 2.6e-34 149.4 193 47.2
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 5.7e-34 148.3 242 45.0
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 5.7e-34 148.3 182 51.1
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 5.7e-34 148.3 186 50.0
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 9.8e-34 147.5 194 48.5
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.3e-33 147.1 189 52.4
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 1.7e-33 146.7 194 52.1
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 3.7e-33 145.6 175 53.1
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 6.3e-33 144.8 143 58.0
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 1.1e-32 144.1 182 52.2
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.4e-32 142.9 187 50.8
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 2.4e-32 142.9 187 50.8
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 4.1e-32 142.1 184 50.5
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 4.1e-32 142.1 181 49.2
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 7.0e-32 141.4 129 63.6
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 1.6e-31 140.2 209 44.0
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.0e-31 139.8 189 48.7
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 4.5e-31 138.7 186 46.8
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 5.9e-31 138.3 193 56.0
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 7.7e-31 137.9 187 49.2
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 7.7e-31 137.9 203 47.8
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.3e-30 137.1 193 44.6
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 1.3e-30 137.1 193 44.6
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.3e-30 137.1 189 48.1
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.7e-30 136.7 189 49.7
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 1.7e-30 136.7 195 44.1
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.7e-30 136.7 141 57.4
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 2.3e-30 136.3 192 48.4
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 3.8e-30 135.6 189 47.1
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.5e-30 134.8 188 49.5
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.5e-30 134.8 188 49.5
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 6.5e-30 134.8 182 61.5
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 8.6e-30 134.4 113 67.3
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 8.6e-30 134.4 113 67.3
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 1.5e-29 133.7 205 46.8
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.9e-29 133.3 189 48.1
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 4.2e-29 132.1 188 49.5
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 4.2e-29 132.1 190 47.4
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 2.1e-28 129.8 174 60.9
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 3.6e-28 129.0 198 48.0
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 4.7e-28 128.6 143 53.8
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 6.1e-28 128.3 100 68.0
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 8.0e-28 127.9 132 58.3
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 1.0e-27 127.5 197 44.7
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.0e-27 127.5 191 48.2
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.4e-27 127.1 106 66.0
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.4e-27 127.1 189 47.1
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.4e-27 127.1 150 52.0
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 1.8e-27 126.7 192 45.8
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.8e-27 126.7 198 46.5
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 3.0e-27 125.9 143 55.2
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 2.0e-26 123.2 132 56.1
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 2.6e-26 122.9 93 69.9
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 2.6e-26 122.9 93 69.9
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 3.4e-26 122.5 133 56.4
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 4.4e-26 122.1 103 65.0
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 5.7e-26 121.7 93 68.8
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 5.7e-26 121.7 93 69.9
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 5.7e-26 121.7 93 69.9
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 1.3e-25 120.6 186 48.4
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 2.8e-25 119.4 98 65.3
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.7e-25 119.0 137 52.6
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 3.7e-25 119.0 137 52.6
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.7e-25 119.0 184 49.5
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 4.9e-25 118.6 93 68.8
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 4.9e-25 118.6 93 68.8
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.1e-24 117.5 134 54.5
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 2.4e-24 116.3 115 56.5
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 3.1e-24 115.9 88 68.2
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 3.1e-24 115.9 101 65.3
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 4.1e-24 115.5 193 42.0
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 5.4e-24 115.2 197 44.2
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-23 113.6 196 43.9
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 1.6e-23 113.6 84 72.6
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 1.6e-23 113.6 196 43.9
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 1.6e-23 113.6 192 45.3
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.6e-23 113.6 89 69.7
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.7e-23 112.8 159 46.5
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 2.7e-23 112.8 222 41.4
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 3.5e-23 112.5 84 71.4
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.5e-23 112.5 109 59.6
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 3.5e-23 112.5 197 46.2
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 5.9e-23 111.7 125 54.4
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 7.8e-23 111.3 192 42.2
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.0e-22 110.9 185 42.2
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 1.0e-22 110.9 139 51.1
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 1.7e-22 110.2 180 46.1
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 1.7e-22 110.2 180 46.1
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 2.3e-22 109.8 158 44.9
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 2.3e-22 109.8 123 54.5
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 6.6e-22 108.2 197 43.7
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-21 107.5 102 61.8
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.1e-21 107.5 102 61.8
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.1e-21 107.5 214 43.5
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.5e-21 106.3 159 45.9
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 3.3e-21 105.9 110 56.4
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 3.3e-21 105.9 114 57.0
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 4.3e-21 105.5 102 61.8
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 4.3e-21 105.5 151 47.7
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 7.3e-21 104.8 157 47.8
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-20 104.0 190 46.3
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 1.0e-19 100.9 189 42.9
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 2.3e-19 99.8 87 62.1
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 3.0e-19 99.4 87 59.8
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 3.0e-19 99.4 182 43.4
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 8.9e-19 97.8 137 49.6
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 8.9e-19 97.8 136 48.5
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.5e-18 97.1 125 52.0
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 1.5e-18 97.1 125 50.4
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 2.0e-18 96.7 196 38.8
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 9.8e-18 94.4 196 38.3
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 2.2e-17 93.2 139 46.0
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 8.3e-17 91.3 103 57.3
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.4e-16 90.5 103 56.3
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.4e-16 89.7 229 34.5
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 4.1e-16 89.0 183 53.0
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 9.2e-16 87.8 121 48.8
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 9.2e-16 87.8 121 48.8
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 9.2e-16 87.8 183 52.5
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 2.0e-15 86.7 139 46.8
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 2.0e-15 86.7 139 44.6
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 2.0e-15 86.7 179 43.6
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 2.7e-15 86.3 191 39.3
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 2.7e-15 86.3 125 48.8
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 1.0e-14 84.3 121 47.9
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.7e-14 83.6 91 54.9
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 5.0e-14 82.0 101 47.5
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 6.6e-14 81.6 89 57.3
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 6.6e-14 81.6 89 57.3
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 1.9e-13 80.1 117 49.6
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 4.3e-13 79.0 74 60.8
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 6.2e-12 75.1 81 50.6
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 4.4e-10 68.9 110 42.7
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 2.2e-09 66.6 45 68.9
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 2.9e-09 66.2 45 71.1
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 4.9e-09 65.5 41 78.0
CSS0028767 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.2e-08 61.2 86 47.7
CSS0035418 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 9.2e-08 61.2 86 47.7
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 1.3e-06 57.4 84 38.1
Aa31LG5G2650 Aethionema arabicum HOM05D003686 ORTHO05D004322 5.0e-06 55.5 119 37.0


User provided reference genes

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