Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 6.2e-251 870.5 514 100.0
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 1.2e-169 600.5 514 70.8
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 1.2e-169 600.5 514 73.2
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 3.6e-166 589.0 515 70.3
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 4.9e-163 578.6 515 71.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.1e-162 574.7 519 70.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 9.2e-162 574.3 514 71.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.5e-161 572.4 558 66.8
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.5e-161 572.4 558 66.8
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.5e-159 566.2 512 67.2
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 5.6e-159 565.1 515 69.7
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 9.6e-159 564.3 515 70.1
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.2e-158 563.9 512 70.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.6e-158 563.5 516 71.7
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 3.6e-158 562.4 514 72.6
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 4.0e-157 558.9 515 69.3
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 3.4e-156 555.8 514 66.1
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.4e-156 555.4 512 68.2
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 4.2e-154 548.9 512 67.2
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 7.1e-154 548.1 513 65.9
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 9.3e-154 547.7 514 65.8
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 3.0e-152 542.7 514 71.2
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 6.6e-152 541.6 519 68.2
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.1e-151 540.8 527 64.7
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.5e-151 540.4 527 64.5
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 9.6e-151 537.7 516 70.0
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.3e-150 537.3 527 69.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.1e-150 536.6 510 69.6
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.8e-149 533.5 516 62.8
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.7e-147 526.9 515 63.3
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 2.9e-147 526.2 515 64.1
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.9e-147 526.2 514 64.4
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 3.8e-147 525.8 548 65.1
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 6.4e-147 525.0 516 68.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 2.7e-145 519.6 526 68.3
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.7e-144 516.9 517 69.1
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.7e-144 516.9 515 66.4
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 3.0e-144 516.2 522 63.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.0e-144 516.2 526 67.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 5.1e-144 515.4 526 67.9
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-143 514.2 514 63.2
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.1e-142 510.0 509 61.9
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 2.8e-142 509.6 517 68.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.6e-142 509.2 526 67.5
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.1e-141 507.7 512 65.0
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.1e-141 506.1 511 66.7
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 4.0e-141 505.8 515 62.3
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 5.3e-141 505.4 526 65.0
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 5.3e-141 505.4 513 63.2
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 4.5e-140 502.3 512 63.7
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 7.6e-140 501.5 527 66.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 6.4e-139 498.4 514 62.6
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.4e-138 497.3 516 64.5
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 7.1e-138 495.0 513 63.2
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.7e-137 493.0 517 63.8
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.3e-136 490.7 515 63.5
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.8e-136 490.3 361 75.9
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.3e-136 490.0 475 66.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.9e-136 489.2 517 60.5
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 3.3e-135 486.1 524 62.0
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 4.3e-135 485.7 475 66.3
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.1e-133 479.6 531 57.8
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 4.0e-133 479.2 537 57.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 1.5e-132 477.2 518 64.7
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 4.5e-132 475.7 514 59.5
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.3e-131 474.2 511 65.4
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.7e-131 473.8 457 69.1
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 4.9e-131 472.2 513 60.6
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 8.4e-131 471.5 519 64.7
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 8.4e-131 471.5 537 60.9
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.4e-130 470.7 543 61.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.4e-130 470.7 497 67.0
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 3.2e-130 469.5 526 59.7
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 5.5e-130 468.8 493 68.4
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.2e-129 467.6 514 61.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 1.3e-128 464.2 536 59.7
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.8e-128 463.8 531 57.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.7e-128 461.5 511 55.8
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.5e-127 460.7 516 63.2
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-127 460.3 557 55.1
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.1e-126 456.8 467 61.2
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 2.8e-126 456.4 515 60.0
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.6e-124 449.9 517 62.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 7.6e-124 448.4 522 52.3
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 7.6e-124 448.4 528 58.0
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.0e-123 448.0 510 54.5
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 5.5e-122 442.2 514 61.7
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.5e-122 442.2 515 57.3
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 7.1e-122 441.8 322 75.2
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 9.3e-122 441.4 516 61.4
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 9.3e-122 441.4 518 52.3
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 2.7e-121 439.9 516 61.4
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 2.7e-121 439.9 514 61.5
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 2.7e-121 439.9 516 61.4
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.5e-121 439.5 551 52.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 3.9e-120 436.0 517 61.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.1e-120 435.6 549 54.5
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 1.6e-118 430.6 532 56.4
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 8.2e-118 428.3 508 58.9
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 8.2e-118 428.3 509 59.7
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.4e-117 426.8 527 54.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 5.3e-117 425.6 513 60.0
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.2e-115 420.2 483 62.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 9.4e-114 414.8 519 60.5
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 6.1e-113 412.1 517 59.8
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.0e-112 411.4 515 59.8
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 5.1e-112 409.1 516 56.0
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 9.7e-111 404.8 581 49.7
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 2.4e-109 400.2 506 57.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.4e-108 396.4 474 64.3
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 9.4e-106 388.3 506 54.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 1.2e-105 387.9 528 58.0
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.0e-104 384.8 516 48.8
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.7e-103 379.0 515 54.6
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 7.4e-103 378.6 503 56.9
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 7.4e-103 378.6 503 56.9
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.3e-102 377.9 436 61.5
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 6.3e-102 375.6 521 57.4
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 2.4e-101 373.6 453 58.9
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 1.5e-98 364.4 438 64.6
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.7e-97 359.4 328 61.3
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 5.5e-90 335.9 522 48.1
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.6e-89 334.3 514 42.2
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 4.4e-87 326.2 414 60.6
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 5.7e-87 325.9 326 75.5
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 9.8e-87 325.1 512 43.4
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 2.4e-85 320.5 523 46.7
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.7e-83 314.3 512 43.0
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.1e-82 311.6 523 45.9
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.9e-82 310.8 385 61.3
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.1e-81 307.4 525 43.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-81 307.4 525 43.2
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.6e-81 306.6 525 43.2
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-80 305.1 525 43.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 1.0e-80 305.1 510 53.9
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.2e-79 301.6 335 70.4
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.5e-79 301.2 523 42.8
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.7e-79 299.3 349 54.4
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 8.6e-75 285.4 195 68.2
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 5.4e-69 266.2 397 47.9
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.3e-62 245.0 312 52.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.7e-59 234.6 332 64.5
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 6.6e-59 232.6 331 43.5
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 2.3e-56 224.2 379 57.5
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.5e-52 210.3 224 58.0
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.9e-46 190.7 322 52.5
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-44 184.5 481 35.8
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.1e-40 170.6 178 77.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.9e-38 163.3 182 66.5
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.5e-34 151.8 101 69.3
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-33 147.1 239 40.6
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.2e-25 119.8 106 73.6
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.0e-23 114.8 312 31.1
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.7e-20 104.4 271 35.4
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.9e-18 98.2 136 39.7
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 1.1e-16 92.4 56 76.8
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.4e-16 92.0 58 65.5
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 4.0e-16 90.5 54 64.8
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.6e-12 78.6 51 68.6
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 1.1e-10 72.4 52 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.7e-10 70.1 211 35.1
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 5.3e-08 63.5 178 42.1
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 5.3e-08 63.5 168 28.0
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.5e-07 60.5 67 40.3
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 7.6e-07 59.7 141 37.6


User provided reference genes

Program Settings