Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 2.4e-206 721.8 350 100.0
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 3.0e-180 635.2 349 88.5
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 7.4e-179 630.6 355 85.6
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.6e-178 629.4 354 86.7
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.8e-178 628.6 349 87.1
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 2.8e-178 628.6 349 87.1
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 3.1e-177 625.2 354 84.7
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.0e-175 620.2 353 84.7
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.7e-175 619.4 343 86.9
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.2e-175 619.0 355 84.2
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 8.5e-175 617.1 345 85.8
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 1.1e-174 616.7 345 85.8
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.4e-174 616.3 343 87.8
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.9e-174 615.9 354 85.3
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 9.3e-174 613.6 352 84.9
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.2e-173 613.2 356 84.3
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.6e-173 612.8 356 84.3
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.6e-173 612.8 356 84.3
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 1.6e-173 612.8 354 83.6
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 2.1e-173 612.5 342 88.0
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 2.7e-173 612.1 368 81.0
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 2.7e-173 612.1 356 84.0
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 2.7e-173 612.1 341 86.2
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 6.1e-173 610.9 356 83.7
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 7.9e-173 610.5 356 84.0
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 1.3e-172 609.8 343 86.9
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.3e-172 609.0 358 84.1
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 3.9e-172 608.2 378 78.8
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 5.1e-172 607.8 338 86.4
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 8.7e-172 607.1 357 82.4
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.1e-171 606.7 348 84.5
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.9e-171 605.9 354 84.7
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.5e-171 605.5 359 82.7
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.5e-171 605.5 359 82.2
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 3.3e-171 605.1 353 85.6
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.3e-171 605.1 356 82.9
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 3.3e-171 605.1 356 82.9
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 4.3e-171 604.7 352 82.4
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 5.7e-171 604.4 346 84.1
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 5.7e-171 604.4 350 83.1
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 7.4e-171 604.0 356 82.6
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 7.4e-171 604.0 351 83.5
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 9.7e-171 603.6 353 82.7
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 9.7e-171 603.6 342 86.3
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 1.7e-170 602.8 344 84.9
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 4.8e-170 601.3 345 84.3
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 2.4e-169 599.0 379 78.1
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 3.1e-169 598.6 343 84.5
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.9e-169 597.4 343 84.3
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 3.4e-168 595.1 340 84.7
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 5.9e-168 594.3 362 81.2
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 5.0e-167 591.3 353 82.4
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.1e-166 590.1 375 78.9
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 2.5e-166 589.0 346 82.1
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 2.5e-166 589.0 370 78.9
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 4.2e-166 588.2 397 74.8
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 9.4e-166 587.0 323 85.8
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.2e-165 586.6 322 88.5
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.1e-165 585.9 330 86.4
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 7.9e-165 583.9 391 75.7
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 3.0e-164 582.0 345 81.7
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 9.7e-163 577.0 315 87.9
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 4.8e-162 574.7 345 81.2
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.1e-161 573.5 357 79.3
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.0e-160 569.3 351 80.1
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 2.0e-160 569.3 386 74.9
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.6e-160 568.9 341 81.2
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 2.2e-159 565.8 335 83.6
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 8.5e-159 563.9 353 79.9
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 8.5e-159 563.9 347 80.1
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 6.1e-157 557.8 355 78.0
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 1.4e-156 556.6 327 84.1
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 3.9e-156 555.1 355 77.7
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 7.4e-155 550.8 309 84.8
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 1.3e-154 550.1 342 80.1
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 3.1e-153 545.4 359 76.0
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 3.1e-153 545.4 339 79.4
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 9.1e-153 543.9 379 75.5
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 9.1e-153 543.9 363 76.0
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 3.5e-152 542.0 395 69.6
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 7.7e-152 540.8 368 73.9
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.6e-149 533.1 344 77.9
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 3.6e-149 531.9 338 74.3
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 1.8e-148 529.6 353 77.3
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 1.8e-148 529.6 432 65.0
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 4.4e-147 525.0 316 81.0
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 4.4e-147 525.0 332 74.7
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 5.7e-147 524.6 313 77.0
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 4.2e-142 508.4 314 79.9
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.4e-140 503.4 357 72.8
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.1e-137 493.8 358 71.8
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 7.0e-137 491.1 316 71.8
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 9.1e-137 490.7 296 81.8
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 5.0e-135 485.0 343 72.3
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 1.1e-134 483.8 343 73.2
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 3.4e-131 472.2 366 67.5
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 1.8e-129 466.5 312 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 8.0e-125 451.1 256 83.2
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 1.2e-123 447.2 324 64.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.3e-119 433.0 238 87.8
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.1e-117 426.4 344 64.5
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 3.6e-117 425.6 312 67.9
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 7.0e-113 411.4 353 58.6
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 7.8e-112 407.9 319 65.8
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 1.5e-110 403.7 227 84.6
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.6e-109 400.2 237 82.3
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 3.1e-108 396.0 229 83.8
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 3.1e-108 396.0 229 83.8
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 3.4e-107 392.5 214 86.9
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 4.4e-107 392.1 225 81.8
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 3.7e-106 389.0 321 64.2
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 7.3e-102 374.8 227 79.7
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 9.5e-102 374.4 348 60.1
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.2e-101 374.0 226 80.5
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 7.8e-96 354.8 424 46.5
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.6e-95 351.7 216 79.6
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 2.4e-76 290.0 220 67.3
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 3.9e-71 272.7 195 71.8
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 3.3e-62 243.0 267 53.2
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 2.2e-61 240.4 190 65.3
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.5e-54 217.6 130 82.3
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 5.9e-51 205.7 354 39.5
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 8.8e-47 191.8 113 78.8
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 3.3e-46 189.9 114 82.5
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.2e-43 181.4 122 73.0
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 2.0e-35 154.1 101 79.2
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 1.3e-34 151.4 94 78.7
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 5.2e-31 139.4 83 77.1
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.4e-30 136.3 106 64.2
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.0e-26 122.9 74 79.7
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 6.8e-23 112.5 70 77.1
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.2e-22 111.7 77 70.1
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 6.6e-18 95.9 71 63.4
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.5e-17 94.7 57 75.4
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 2.8e-16 90.5 76 59.2
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.8e-15 87.8 60 70.0
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.3e-13 81.6 77 57.1
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 3.7e-13 80.1 54 74.1
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 6.3e-13 79.3 93 50.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 3.3e-09 67.0 34 79.4
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 4.3e-09 66.6 31 90.3
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 1.0e-07 62.0 38 76.3
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 1.0e-07 62.0 38 76.3
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 2.0e-06 57.8 43 65.1


User provided reference genes

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