Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1000T74 Lonicera japonica HOM05D002159 ORTHO05D005625 8.0e-222 773.5 397 100.0
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 6.1e-137 491.5 326 80.7
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 1.5e-122 443.7 336 71.4
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 1.9e-122 443.4 326 72.4
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 3.6e-121 439.1 339 70.5
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 8.0e-121 438.0 326 71.8
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 8.0e-121 438.0 326 71.8
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 1.4e-120 437.2 336 70.8
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 2.3e-120 436.4 317 72.6
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 5.2e-120 435.3 327 71.3
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 1.7e-118 430.3 327 69.1
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 6.3e-118 428.3 328 69.2
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 8.3e-118 427.9 326 70.9
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 5.3e-117 425.2 326 70.2
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 1.2e-116 424.1 330 68.2
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 7.7e-116 421.4 338 67.8
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 7.7e-116 421.4 325 69.8
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 1.7e-115 420.2 327 69.1
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 2.2e-115 419.9 317 71.0
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 3.2e-114 416.0 326 68.4
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 3.6e-113 412.5 317 69.7
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 3.6e-113 412.5 317 68.8
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.0e-112 411.0 327 67.3
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 1.8e-112 410.2 335 64.8
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 1.8e-112 410.2 317 68.1
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 3.0e-112 409.5 336 66.4
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 3.0e-112 409.5 335 64.8
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 3.0e-112 409.5 353 64.9
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 5.2e-112 408.7 329 66.9
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 6.8e-112 408.3 328 66.8
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 1.2e-111 407.5 326 66.9
Actinidia02884 Actinidia chinensis HOM05D002159 ORTHO05D005625 1.5e-111 407.1 323 68.7
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 3.4e-111 406.0 329 66.0
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 3.4e-111 406.0 327 66.7
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 7.5e-111 404.8 327 66.7
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 2.2e-110 403.3 326 65.6
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 2.8e-110 402.9 328 66.2
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 4.8e-110 402.1 328 64.9
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 4.8e-110 402.1 327 65.1
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 8.3e-110 401.4 319 66.1
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 1.1e-109 401.0 317 66.9
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 1.8e-109 400.2 336 64.3
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 4.1e-109 399.1 344 64.5
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 5.4e-109 398.7 320 67.5
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 7.0e-109 398.3 319 65.8
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 1.2e-108 397.5 317 67.8
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 1.2e-108 397.5 337 65.3
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 1.6e-108 397.1 335 63.3
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 2.0e-108 396.7 330 64.2
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 2.7e-108 396.4 328 65.5
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 2.7e-108 396.4 328 64.0
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 4.5e-108 395.6 336 64.3
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 7.7e-108 394.8 326 65.6
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 1.3e-107 394.0 338 62.4
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 1.7e-107 393.7 330 64.2
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 8.6e-107 391.3 320 66.6
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 1.9e-106 390.2 326 63.5
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 2.5e-106 389.8 326 63.5
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 3.3e-106 389.4 327 64.8
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 5.5e-106 388.7 327 63.0
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 5.5e-106 388.7 326 63.2
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 5.5e-106 388.7 327 64.8
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 7.2e-106 388.3 327 65.1
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 9.5e-106 387.9 330 62.7
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 1.2e-105 387.5 326 63.2
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.2e-105 387.5 326 63.2
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 2.8e-105 386.3 327 64.5
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 6.1e-105 385.2 337 63.2
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 8.0e-105 384.8 334 63.2
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 8.0e-105 384.8 326 62.9
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.0e-104 384.4 330 62.1
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 1.4e-104 384.0 328 62.5
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 3.0e-104 382.9 330 62.4
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 4.0e-104 382.5 330 61.8
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 4.0e-104 382.5 328 64.0
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 6.8e-104 381.7 327 63.3
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 1.5e-103 380.6 330 62.1
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 4.4e-103 379.0 318 63.8
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 1.8e-101 373.6 327 61.5
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 3.2e-101 372.9 318 62.3
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 4.1e-101 372.5 318 61.9
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 9.2e-101 371.3 318 62.3
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 1.6e-100 370.5 318 61.6
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 4.5e-100 369.0 328 59.8
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 1.0e-99 367.9 318 61.6
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 1.0e-99 367.9 318 61.3
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 1.3e-99 367.5 318 61.6
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 1.7e-99 367.1 318 61.3
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 2.3e-99 366.7 297 66.0
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 2.3e-99 366.7 297 66.0
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 2.9e-99 366.3 318 61.0
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 3.9e-99 365.9 317 60.9
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 3.9e-99 365.9 297 65.7
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 6.6e-99 365.2 318 61.3
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 1.1e-98 364.4 318 61.0
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 3.3e-98 362.8 327 62.1
AL6G35160 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 3.7e-94 349.4 323 58.5
HPP92_025761 Vanilla planifolia HOM05D002159 ORTHO05D005625 1.6e-89 334.0 327 59.3
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 2.1e-89 333.6 327 56.0
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 6.8e-88 328.6 336 57.1
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 3.9e-83 312.8 310 54.5
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 2.0e-79 300.4 332 50.3
RcHm_v2.0_Chr1g0379181 Rosa chinensis HOM05D002159 ORTHO05D005625 2.0e-79 300.4 264 61.0
RcHm_v2.0_Chr1g0379351 Rosa chinensis HOM05D002159 ORTHO05D005625 2.0e-79 300.4 264 61.0
MD01G1203600 Malus domestica HOM05D002159 ORTHO05D005625 7.6e-79 298.5 288 58.7
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 3.5e-76 289.7 287 53.0
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 1.5e-74 284.3 349 47.3
Cc02_g02790 Coffea canephora HOM05D002159 ORTHO05D005625 1.5e-74 284.3 192 74.5
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 6.8e-72 275.4 298 50.7
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 1.2e-68 264.6 324 50.0
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 5.1e-67 259.2 180 74.4
VMungo0464G2116 Vigna mungo HOM05D002159 ORTHO05D005625 3.3e-66 256.5 182 73.6
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 9.0e-64 248.4 330 47.0
arahy.Tifrunner.gnm1.ann1.JGS186 Arachis hypogaea HOM05D002159 ORTHO05D005625 1.8e-56 224.2 190 63.7
Glyma.11G170602 Glycine max HOM05D002159 ORTHO05D005625 1.5e-55 221.1 206 59.7
RcHm_v2.0_Chr1g0378701 Rosa chinensis HOM05D002159 ORTHO05D005625 1.5e-55 221.1 346 43.1
Glyma.11G171001 Glycine max HOM05D002159 ORTHO05D005625 1.6e-52 211.1 211 55.9
RcHm_v2.0_Chr1g0377671 Rosa chinensis HOM05D002159 ORTHO05D005625 2.5e-50 203.8 187 59.4
Haze_26919 Corylus avellana HOM05D002159 ORTHO05D005625 1.1e-48 198.4 300 37.0
Psat0s2150g0160 Pisum sativum HOM05D002159 ORTHO05D005625 1.4e-48 198.0 169 62.7
SHI10393 Sapria himalayana HOM05D002159 ORTHO05D005625 1.0e-46 191.8 190 53.7
MCO01G234 Micromonas commoda HOM05D002159 ORTHO05D005625 1.6e-44 184.5 291 37.8
MCO01G235 Micromonas commoda HOM05D002159 ORTHO05D005625 1.6e-44 184.5 291 37.8
Cc02_g02800 Coffea canephora HOM05D002159 ORTHO05D005625 2.1e-41 174.1 86 95.3
Actinidia34125 Actinidia chinensis HOM05D002159 ORTHO05D005625 9.0e-40 168.7 86 93.0
MBI17_g39903_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D005625 1.7e-38 164.5 86 88.4
RcHm_v2.0_Chr1g0377681 Rosa chinensis HOM05D002159 ORTHO05D005625 6.5e-38 162.5 117 71.8
SEGI_24581 Sequoiadendron giganteum HOM05D002159 ORTHO05D005625 1.1e-37 161.8 103 75.7
VMungo0464G0478 Vigna mungo HOM05D002159 ORTHO05D005625 3.0e-35 153.7 79 91.1
Glyma.11G171003 Glycine max HOM05D002159 ORTHO05D005625 3.3e-34 150.2 106 76.4
PRCOL_00000390 Prasinoderma coloniale HOM05D002159 ORTHO05D005625 3.3e-34 150.2 356 30.6
Cre12.g487600 Chlamydomonas reinhardtii HOM05D002159 ORTHO05D005625 1.4e-29 134.8 294 31.6
FAN06G2653 Fragaria x ananassa HOM05D002159 ORTHO05D005625 7.9e-28 129.0 162 50.0
Psat0s2150g0120 Pisum sativum HOM05D002159 ORTHO05D005625 2.0e-18 97.8 142 47.2
FvH4_7g30022 Fragaria vesca HOM05D002159 ORTHO05D005625 5.7e-18 96.3 70 65.7
SHI10394 Sapria himalayana HOM05D002159 ORTHO05D005625 8.2e-17 92.4 69 63.8
Cfa024982 Carpinus fangiana HOM05D002159 ORTHO05D124127 3.8e-14 83.6 268 26.9
Dinv20943 Davidia involucrata HOM05D002159 ORTHO05D045108 3.8e-14 83.6 51 76.5
Dinv21001 Davidia involucrata HOM05D002159 ORTHO05D045108 3.8e-14 83.6 51 76.5
Nitab4.5_0006377g0020 Nicotiana tabacum HOM05D002159 ORTHO05D005625 6.5e-14 82.8 60 71.7
unitig_22.g6110 Utricularia gibba HOM05D002001 ORTHO05D004100 3.2e-13 80.5 262 24.8
MCO04G421 Micromonas commoda HOM05D002001 ORTHO05D004100 9.4e-13 79.0 269 23.4
Sabra17G0068100 Salix brachista HOM05D002001 ORTHO05D004100 1.2e-12 78.6 268 24.6
Lsat_1_v5_gn_7_79181 Lactuca sativa HOM05D002001 ORTHO05D004100 2.1e-12 77.8 253 24.9
HPP92_015169 Vanilla planifolia HOM05D002001 ORTHO05D004100 3.6e-12 77.0 253 24.1
Aa31sc291G30 Aethionema arabicum HOM05D002001 ORTHO05D004100 6.1e-12 76.3 253 24.1
HanXRQChr17g0559661 Helianthus annuus HOM05D002001 ORTHO05D004100 6.1e-12 76.3 253 24.5
FvH4_4g07000 Fragaria vesca HOM05D002001 ORTHO05D004100 1.0e-11 75.5 254 24.0
FAN12G2583 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.0e-11 75.5 254 24.0
FAN17G1518 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.0e-11 75.5 254 23.6
FAN22G0816 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.0e-11 75.5 254 24.0
Gohir.D13G034600 Gossypium hirsutum HOM05D002001 ORTHO05D004100 1.0e-11 75.5 253 24.5
Gorai.013G039200 Gossypium raimondii HOM05D002001 ORTHO05D004100 1.0e-11 75.5 253 24.5
FAN07G2305 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.4e-11 75.1 254 23.6
ECA236G3872 Erigeron canadensis HOM05D002001 ORTHO05D004100 1.8e-11 74.7 253 24.1
RcHm_v2.0_Chr4g0399131 Rosa chinensis HOM05D002001 ORTHO05D004100 3.0e-11 73.9 254 22.4
SpUn0431_0010 Schrenkiella parvula HOM05D002159 ORTHO05D372157 8.8e-11 72.4 49 75.5
CAN.G529.48 Capsicum annuum HOM05D002001 ORTHO05D004100 3.3e-10 70.5 269 24.2
QL02p099792 Quercus lobata HOM05D002001 ORTHO05D004100 4.4e-10 70.1 253 22.9
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 5.7e-10 69.7 235 22.1
Sc04g0007250 Simmondsia chinensis HOM05D002001 ORTHO05D006833 7.5e-10 69.3 255 23.5
Sopen07g024830 Solanum pennellii HOM05D002001 ORTHO05D004100 9.7e-10 68.9 269 23.8
Solyc07g049480.3 Solanum lycopersicum HOM05D002001 ORTHO05D004100 1.3e-09 68.6 269 23.8
PGSC0003DMG400000682 Solanum tuberosum HOM05D002001 ORTHO05D004100 1.3e-09 68.6 269 23.8
BcaB01g03611 Brassica carinata HOM05D002159 ORTHO05D024008 2.2e-09 67.8 95 42.1
CAN.G290.19 Capsicum annuum HOM05D002001 ORTHO05D004100 2.2e-09 67.8 269 23.8
Peaxi162Scf00003g03948 Petunia axillaris HOM05D002001 ORTHO05D004100 2.2e-09 67.8 254 23.6
PRCOL_00001441 Prasinoderma coloniale HOM05D002001 ORTHO05D004100 3.7e-09 67.0 271 20.7
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.8e-09 66.6 251 24.3
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.8e-09 66.6 251 24.3
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 4.8e-09 66.6 251 24.3
Thecc.03G179000 Theobroma cacao HOM05D002159 ORTHO05D024008 6.3e-09 66.2 41 73.2
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 1.8e-08 64.7 255 22.0
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 7.0e-08 62.8 256 23.4
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 7.0e-08 62.8 251 23.1
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 9.1e-08 62.4 263 23.2
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 3.5e-07 60.5 261 21.1
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 1.7e-06 58.2 256 23.0
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-06 58.2 229 22.3


User provided reference genes

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