Gene: Solyc07g049480.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g049480.3
  • Transcript Identifier Solyc07g049480.3.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 59673863-59680943 : positive

Gene Family Information

  • ID HOM05D002001
  • #Genes/#Species 331/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g049480.3.1
  • uniprot A0A3Q7HDY1
  • gene_id Solyc07g049480

Descriptions

  • Description Cleavage and polyadenylation specificity factor subunit 3 (AHRD V3.3 *** A0A2G2XER9_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006378
IBA
GOA DatabasemRNA polyadenylation
GO:0006398
IBA
GOA DatabasemRNA 3'-end processing by stem-loop binding and cleavage
GO:0016180
ISO
PLAZA Integrative OrthologysnRNA processing AT1G61010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0004521
IBA
GOA Databaseendoribonuclease activity
GO:0008409
IBA
GOA Database5'-3' exonuclease activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G61010

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005847
IBA
GOA DatabasemRNA cleavage and polyadenylation specificity factor complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001279 Metallo-beta-lactamase
IPR021718 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR022712 Beta-Casp domain
IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain
Mapman id Description
16.3.1.2.3 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.nuclease component CPSF73-I
16.3.2.1.5 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.nuclease component CPSF73-I