Gene: Cc02_g02790
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc02_g02790
- Transcript Identifier Cc02_g02790.1
- Gene Type Coding gene
- Location chr2 : 2232922-2237585 : negative
Gene Family Information
- ID HOM05D002159
- #Genes/#Species 310/100
- Phylogenetic origin
- ID ORTHO05D005625
- #Genes/#Species 154/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- UniProtKB E0CV08
- UniProtKB B9N6K2
- UniProtKB Q9V3D6
- UniProtKB B9RVY3
- UniProtKB Q9LKF9
- UniProtKB Q652P4
- id GSCOCG00020147001
Descriptions
- Description Cleavage and polyadenylation specificity factor subunit 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006378 | IEA | InterPro | mRNA polyadenylation | |
| GO:0006379 | IEA | InterPro | mRNA cleavage | |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT5G23880 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT5G23880 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G23880 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005847 | IEA | InterPro | mRNA cleavage and polyadenylation specificity factor complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G23880 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT5G23880 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G23880 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR025069 | Cleavage and polyadenylation specificity factor 2, C-terminal |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR022712 | Beta-Casp domain |
| IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
| IPR027075 | Cleavage and polyadenylation specificity factor subunit 2 |
| Mapman id | Description |
|---|---|
| 16.3.1.2.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF100/Ydh1 |