Gene: Zm00001eb162800

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb162800
  • Transcript Identifier Zm00001eb162800_T003
  • Gene Type Coding gene
  • Location 3 : 233407056-233415296 : negative

Gene Family Information

  • ID HOM05D002159
  • #Genes/#Species 310/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb162800_T003
  • pid Zm00001eb162800_P003
  • uniprot A0A1D6NN41
  • uniprot A0A3L6FMW4
  • uniprot A0A1D6NN40
  • uniprot B6U1S6
  • uniprot B7ZZT7
  • uniprot A0A1D6NN37
  • uniprot A0A1D6NN34
  • uniprot A0A1D6NN33
  • uniprot A0A1D6NN32
  • refseq XP_008673000.1
  • refseq XM_008674778.1
  • V4_identifier Zm00001d044552

Descriptions

  • Description Zm00001e020763
  • Description Cleavage and polyadenylation specificity factor subunit 2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0098789
IBA
GOA Databasepre-mRNA cleavage required for polyadenylation
GO:0006379
IEA
GOA DatabasemRNA cleavage
GO:0006379
IEA
InterPromRNA cleavage
GO:0006378
IBA
IEA
GOA DatabasemRNA polyadenylation
GO:0006378
IEA
InterPromRNA polyadenylation
GO:0006398
IBA
GOA DatabasemRNA 3'-end processing by stem-loop binding and cleavage
GO:0035194
IEA
GOA Databasepost-transcriptional gene silencing by RNA
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G23880
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT5G23880
GO:0003723
IBA
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005847
IBA
IEA
GOA DatabasemRNA cleavage and polyadenylation specificity factor complex
GO:0005847
IEA
InterPromRNA cleavage and polyadenylation specificity factor complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0009506
IEA
GOA Databaseplasmodesma

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001279 Metallo-beta-lactamase
IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain
IPR027075 Cleavage and polyadenylation specificity factor subunit 2
IPR022712 Beta-Casp domain
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR025069 Cleavage and polyadenylation specificity factor 2, C-terminal
IPR035639 CPSF2, metallo-hydrolase domain
Mapman id Description
16.3.1.2.2 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF100/Ydh1