Gene: PGSC0003DMG400000682

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400000682
  • Transcript Identifier PGSC0003DMT400001821
  • Gene Type Coding gene
  • Location ST4.03ch07 : 45277441-45284838 : positive

Gene Family Information

  • ID HOM05D002001
  • #Genes/#Species 331/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37434756
  • id PGSC0003DMG400000682.v4.03
  • uniprot M0ZJ54

Descriptions

  • Description Cleavage and polyadenylation specificity factor subunit 3-I
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006398
IBA
GOA DatabasemRNA 3'-end processing by stem-loop binding and cleavage
GO:0006378
IBA
GOA DatabasemRNA polyadenylation
GO:0016180
IEA
GOA DatabasesnRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008409
IBA
GOA Database5'-3' exonuclease activity
GO:0004521
IBA
GOA Databaseendoribonuclease activity
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G61010

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005847
IBA
GOA DatabasemRNA cleavage and polyadenylation specificity factor complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain
IPR022712 Beta-Casp domain
IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR001279 Metallo-beta-lactamase
IPR021718 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
Mapman id Description
16.3.1.2.3 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.nuclease component CPSF73-I
16.3.2.1.5 RNA processing.RNA 3'-end processing.snRNA maturation.DSP snRNA processing complex.nuclease component CPSF73-I