Gene: FAN06G3579
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN06G3579
- Transcript Identifier FAN06G3579.1
- Gene Type Coding gene
- Location Fvb7-2 : 27563776-27571278 : positive
Gene Family Information
- ID HOM05D002159
- #Genes/#Species 310/100
- Phylogenetic origin
- ID ORTHO05D005625
- #Genes/#Species 154/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb7-2-augustus-gene-275.54.v1.0.a1
- pacid 50492163
Descriptions
- Description K14402 - cleavage and polyadenylation specificity factor subunit 2 (CPSF2, CFT2)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006378 | IEA | InterPro | mRNA polyadenylation | |
| GO:0006379 | IEA | InterPro | mRNA cleavage | |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT5G23880 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004190 | IEA | InterPro | aspartic-type endopeptidase activity | |
| GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT5G23880 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G23880 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016021 | IEA | InterPro | integral component of membrane | |
| GO:0005847 | IEA | InterPro | mRNA cleavage and polyadenylation specificity factor complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G23880 |
| GO:0005802 | ISO | PLAZA Integrative Orthology | trans-Golgi network | AT4G33410 |
| GO:0005768 | ISO | PLAZA Integrative Orthology | endosome | AT4G33410 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT5G23880 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G23880 |
| GO:0005794 | ISO | PLAZA Integrative Orthology | Golgi apparatus | AT4G33410 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001279 | Metallo-beta-lactamase |
| IPR022712 | Beta-Casp domain |
| IPR006639 | Presenilin/signal peptide peptidase |
| IPR035639 | CPSF2, metallo-hydrolase domain |
| IPR025069 | Cleavage and polyadenylation specificity factor 2, C-terminal |
| IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR007369 | Peptidase A22B, signal peptide peptidase |
| IPR027075 | Cleavage and polyadenylation specificity factor subunit 2 |
| Mapman id | Description |
|---|---|
| 16.3.1.2.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF100/Ydh1 |
| 18.11.1.4 | Protein modification.targeting peptide maturation.endomembrane system.signal peptidase (SPP) |