Gene: Lj8C239G4
General Information
Structural Information
- Species Lonicera japonica
- Gene Identifier Lj8C239G4
- Transcript Identifier Lj8C239G4.1
- Gene Type Coding gene
- Location GWHAAZE00000008 : 23905618-23917132 : positive
Gene Family Information
- ID HOM05D002159
- #Genes/#Species 310/100
- Phylogenetic origin
- ID ORTHO05D005625
- #Genes/#Species 154/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Lj8C239G4.1
- Accession GWHGAAZE027625
- Accession GWHTAAZE027659
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006378 | IEA | InterPro | mRNA polyadenylation | |
| GO:0006379 | IEA | InterPro | mRNA cleavage | |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT5G23880 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003677 | ISO | PLAZA Integrative Orthology | DNA binding | AT5G23880 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005847 | IEA | InterPro | mRNA cleavage and polyadenylation specificity factor complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G23880 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT5G23880 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G23880 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR035639 | CPSF2, metallo-hydrolase domain |
| IPR025069 | Cleavage and polyadenylation specificity factor 2, C-terminal |
| IPR022712 | Beta-Casp domain |
| IPR027075 | Cleavage and polyadenylation specificity factor subunit 2 |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like |
| IPR002885 | Pentatricopeptide repeat |
| IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
| IPR001279 | Metallo-beta-lactamase |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| Mapman id | Description |
|---|---|
| 16.11.3.3.4.15 | RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF20) |
| 16.3.1.2.2 | RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.component CPSF100/Ydh1 |