Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 0.0e+00 1307.0 645 100.0
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 0.0e+00 1307.0 645 100.0
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 2.3e-258 895.6 621 73.1
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.2e-253 879.0 616 71.4
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 7.1e-252 874.0 621 70.4
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.6e-251 872.8 622 70.6
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 4.6e-251 871.3 618 70.4
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 5.1e-250 867.8 622 70.4
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.1e-249 866.7 618 71.4
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 1.9e-249 865.9 617 71.3
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 3.3e-249 865.1 621 69.4
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 3.3e-249 865.1 621 69.4
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 8.1e-248 860.5 620 70.6
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 1.1e-247 860.1 622 70.3
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 1.1e-247 860.1 622 70.1
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.4e-247 859.8 617 70.5
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 6.8e-247 857.4 617 70.5
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 2.6e-246 855.5 622 68.6
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 4.4e-246 854.7 621 68.4
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 2.2e-245 852.4 623 68.5
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 6.4e-245 850.9 618 70.1
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 1.4e-244 849.7 618 69.7
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 4.2e-244 848.2 619 69.3
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 1.6e-243 846.3 621 68.6
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 3.5e-243 845.1 618 69.1
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 7.8e-243 844.0 621 68.9
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.0e-242 843.6 622 68.3
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.0e-242 843.6 621 68.9
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 1.3e-242 843.2 618 69.1
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.3e-242 842.4 629 68.8
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 3.0e-242 842.0 621 68.3
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 6.6e-242 840.9 630 67.9
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 6.6e-242 840.9 614 69.1
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 2.5e-241 839.0 624 68.1
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 4.3e-241 838.2 621 68.6
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.3e-240 836.6 621 68.1
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 1.3e-240 836.6 622 68.2
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 1.6e-240 836.3 622 67.8
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.6e-240 836.3 621 68.4
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.1e-240 835.9 630 67.6
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 3.6e-240 835.1 622 67.7
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.4e-239 833.2 622 68.2
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 1.8e-239 832.8 622 66.6
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 3.1e-239 832.0 622 68.2
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 5.3e-239 831.2 621 67.5
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 7.6e-238 827.4 623 65.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 9.9e-238 827.0 621 67.5
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 6.4e-237 824.3 610 67.9
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 8.4e-237 823.9 623 67.9
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 8.4e-237 823.9 622 66.4
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 4.2e-236 821.6 617 66.5
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 7.1e-236 820.8 621 67.6
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 6.0e-235 817.8 619 67.9
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 1.8e-234 816.2 622 65.8
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 1.8e-234 816.2 622 65.8
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 1.8e-234 816.2 622 65.8
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 1.8e-234 816.2 621 66.8
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 1.8e-234 816.2 619 67.4
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 1.8e-234 816.2 621 67.0
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 6.7e-234 814.3 594 68.5
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.3e-233 812.0 621 66.5
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 4.3e-233 811.6 622 65.9
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 5.6e-233 811.2 622 65.3
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.6e-232 809.7 622 65.3
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 4.8e-232 808.1 621 66.0
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 1.8e-231 806.2 650 63.5
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 3.1e-231 805.4 627 66.7
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 4.0e-231 805.1 628 65.3
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.5e-230 803.1 619 64.8
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.9e-230 800.4 619 65.6
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.7e-229 799.7 619 66.6
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 4.9e-229 798.1 618 65.2
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 4.9e-229 798.1 619 66.4
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 6.4e-229 797.7 656 61.7
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 6.4e-229 797.7 627 66.0
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 1.1e-228 797.0 624 64.7
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 1.1e-228 797.0 612 67.3
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 1.4e-228 796.6 624 64.7
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 2.4e-228 795.8 625 66.6
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 3.2e-228 795.4 619 64.6
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.2e-228 795.4 620 65.8
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 2.7e-227 792.3 627 64.9
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 2.7e-227 792.3 624 66.2
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.3e-226 790.0 611 65.5
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.1e-224 782.7 652 63.2
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 5.3e-223 778.1 621 64.9
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 2.6e-222 775.8 622 63.5
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.4e-222 775.4 622 64.3
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 3.4e-222 775.4 644 62.3
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.8e-222 774.6 622 63.3
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 2.2e-221 772.7 622 63.2
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 2.2e-221 772.7 582 66.8
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 8.4e-221 770.8 622 63.2
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 8.4e-221 770.8 622 63.2
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 1.9e-220 769.6 621 63.0
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.0e-218 763.8 622 64.0
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.5e-217 760.0 584 66.8
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 3.3e-217 758.8 715 56.9
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.3e-216 756.9 636 62.1
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 2.8e-216 755.7 683 59.2
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.2e-211 740.3 580 65.5
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.6e-211 738.8 608 63.3
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 7.9e-211 737.6 597 64.7
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 3.1e-207 725.7 561 65.2
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 4.5e-206 721.8 629 61.2
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 8.5e-205 717.6 627 59.5
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.5e-196 689.5 618 59.1
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 7.7e-190 667.9 759 50.5
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.8e-186 656.8 487 69.4
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.3e-181 640.6 570 61.2
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 1.5e-177 627.1 611 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.0e-162 577.8 624 49.2
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.9e-160 568.9 624 48.4
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.1e-159 567.8 624 48.4
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.6e-158 563.9 624 48.2
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 1.0e-157 561.2 634 48.1
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 2.8e-155 553.1 617 48.3
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.5e-153 547.4 624 47.4
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 2.6e-153 546.6 420 65.0
SHI27628 Sapria himalayana HOM05D003203 ORTHO05D003526 3.7e-152 542.7 428 65.2
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 7.0e-151 538.5 628 46.5
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 4.3e-148 529.3 410 64.6
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 8.1e-147 525.0 455 60.2
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 4.6e-142 509.2 374 67.6
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-136 490.3 624 44.7
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 5.1e-133 479.2 424 60.1
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 8.6e-133 478.4 479 53.9
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.6e-132 474.9 624 44.1
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 9.6e-132 474.9 632 42.6
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.1e-124 451.4 542 45.6
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.6e-123 446.4 674 43.0
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 3.3e-116 423.3 301 71.1
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.9e-112 410.2 514 44.7
SpUn0400_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 5.6e-108 396.0 373 56.3
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 1.5e-105 387.9 286 68.2
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 6.7e-101 372.5 359 57.4
Aqoxy3G02869 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 5.7e-100 369.4 301 61.1
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.7e-96 357.8 253 71.1
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 7.9e-94 349.0 238 72.7
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.2e-86 325.1 324 51.9
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 7.4e-84 315.8 179 83.2
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 5.5e-79 299.7 217 70.0
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 2.0e-68 264.6 194 68.6
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.2e-67 261.2 278 51.1
AagrBONN_evm.TU.Sc2ySwM_117.4032 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.5e-65 253.4 203 59.6
vmacro14465 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 3.6e-62 243.8 182 68.1
HPP92_010182 Vanilla planifolia HOM05D003203 ORTHO05D003526 2.0e-60 238.0 188 66.0
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 3.7e-59 233.8 205 60.5
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.9e-55 221.5 207 59.9
TPR.G38674 Trifolium pratense HOM05D003203 ORTHO05D003526 4.3e-47 193.7 117 72.6
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 3.0e-40 171.0 183 54.6
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 6.6e-40 169.9 146 59.6
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 2.7e-33 147.9 98 69.4
Gohir.A03G109301 Gossypium hirsutum HOM05D003203 ORTHO05D003526 4.7e-30 137.1 105 68.6
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 5.2e-29 133.7 133 53.4
Gohir.A08G106700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 8.9e-29 132.9 106 67.9
RcHm_v2.0_Chr1g0326771 Rosa chinensis HOM05D003203 ORTHO05D003526 2.6e-28 131.3 86 72.1
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 4.4e-20 104.0 69 71.0
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 5.8e-20 103.6 59 78.0
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 2.9e-19 101.3 59 76.3
COL.COLO4_02731 Corchorus olitorius HOM05D003203 ORTHO05D003526 3.9e-16 90.9 58 70.7
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 5.6e-15 87.0 84 54.8
TPR.G2853 Trifolium pratense HOM05D003203 ORTHO05D003526 7.6e-12 76.6 50 80.0
CSS0004531 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 8.4e-11 73.2 89 46.1
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 7.1e-10 70.1 44 70.5
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 1.5e-07 62.4 68 47.1
Cre07.g352800 Chlamydomonas reinhardtii HOM05D003203 ORTHO05D003526 3.3e-07 61.2 162 27.8
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 7.3e-07 60.1 33 78.8
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 7.3e-07 60.1 33 78.8
TPR.G33733 Trifolium pratense HOM05D003203 ORTHO05D003526 2.8e-06 58.2 32 81.2


User provided reference genes

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