Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 1.3e-238 829.3 417 100.0
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 3.9e-187 658.3 358 88.0
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 5.7e-186 654.4 358 88.3
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.3e-185 653.3 351 89.5
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 1.1e-184 650.2 349 88.5
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 7.0e-184 647.5 358 87.4
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 1.2e-183 646.7 360 87.2
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 1.6e-183 646.4 356 87.1
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 2.6e-183 645.6 358 86.6
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 4.5e-183 644.8 351 87.7
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 1.3e-182 643.3 358 88.3
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 2.9e-182 642.1 351 87.5
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 6.5e-182 641.0 365 85.8
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 4.2e-181 638.3 357 86.3
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 9.4e-181 637.1 358 85.8
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 1.2e-180 636.7 352 86.9
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 1.2e-180 636.7 351 87.2
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.2e-180 636.7 349 87.1
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 6.1e-180 634.4 352 86.9
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.4e-179 633.3 351 85.8
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.4e-179 633.3 351 85.8
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 1.8e-179 632.9 361 85.0
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 2.3e-179 632.5 357 84.0
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 3.0e-179 632.1 358 84.6
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.0e-179 632.1 351 85.5
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 5.2e-179 631.3 349 86.0
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 8.8e-179 630.6 356 84.0
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 1.1e-178 630.2 358 84.1
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.0e-178 629.4 358 84.9
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 4.4e-178 628.2 342 87.4
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 9.7e-178 627.1 361 83.1
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 1.7e-177 626.3 360 83.1
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.8e-177 625.5 356 84.3
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 4.8e-177 624.8 358 83.0
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 6.3e-177 624.4 359 84.1
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.1e-176 623.6 359 84.1
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 1.4e-176 623.2 359 83.8
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.4e-176 622.5 356 83.7
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.3e-176 621.3 353 84.7
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 3.5e-175 618.6 360 84.2
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 1.7e-174 616.3 397 77.6
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 3.8e-174 615.1 358 83.0
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 1.1e-173 613.6 372 79.8
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 2.5e-173 612.5 357 84.0
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 4.2e-173 611.7 414 74.6
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 5.5e-173 611.3 353 83.6
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 1.6e-172 609.8 382 77.7
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 6.1e-172 607.8 358 83.5
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 8.0e-172 607.4 345 85.5
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.0e-171 607.1 335 89.0
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.8e-171 606.3 364 82.7
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 2.3e-171 605.9 358 83.0
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 2.3e-171 605.9 335 86.9
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 5.2e-171 604.7 387 77.8
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.5e-170 603.2 365 79.7
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 1.3e-169 600.1 394 75.4
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 1.3e-169 600.1 326 88.0
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.7e-169 599.7 360 81.7
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 2.8e-169 599.0 343 84.5
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.8e-168 596.3 352 81.8
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.8e-168 596.3 352 81.8
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 3.1e-168 595.5 351 83.2
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 7.0e-168 594.3 344 82.3
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 3.5e-167 592.0 350 82.3
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 1.0e-166 590.5 350 82.3
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 1.3e-166 590.1 378 78.3
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 5.0e-166 588.2 354 79.4
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 1.1e-165 587.0 360 79.4
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 2.5e-165 585.9 360 79.2
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 1.2e-164 583.6 366 80.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 1.4e-163 580.1 358 79.3
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.3e-161 573.5 398 73.6
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.8e-161 572.4 366 77.9
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.8e-160 569.7 364 78.3
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 2.9e-158 562.4 316 85.8
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 5.0e-158 561.6 327 83.2
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 1.6e-156 556.6 312 85.9
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 2.1e-156 556.2 438 66.7
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 3.6e-156 555.4 359 78.0
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 4.4e-154 548.5 320 83.4
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 1.4e-152 543.5 370 74.3
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 9.2e-152 540.8 352 78.4
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 3.5e-151 538.9 322 77.0
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 1.7e-150 536.6 359 75.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 2.3e-150 536.2 315 78.4
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 3.0e-150 535.8 336 74.4
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.1e-149 533.9 332 80.7
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 3.7e-145 518.8 359 73.8
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 3.7e-145 518.8 371 70.9
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 6.0e-143 511.5 390 67.4
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 1.3e-142 510.4 355 71.3
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 4.3e-141 505.4 358 71.5
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 1.4e-139 500.4 361 71.5
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 8.9e-139 497.7 303 74.3
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 1.3e-137 493.8 362 71.0
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 6.6e-134 481.5 305 73.4
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 4.0e-131 472.2 358 68.4
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 1.1e-128 464.2 289 78.9
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 1.0e-126 457.6 259 82.6
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 3.4e-122 442.6 324 64.5
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 4.4e-122 442.2 352 64.8
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 2.1e-119 433.3 321 70.1
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 3.9e-118 429.1 238 84.9
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 3.3e-117 426.0 231 88.7
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 9.6e-117 424.5 343 65.6
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 1.1e-115 421.0 324 63.6
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 6.4e-113 411.8 228 87.3
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 1.9e-112 410.2 220 88.2
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 1.9e-112 410.2 220 88.2
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 5.4e-112 408.7 239 83.3
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 6.7e-110 401.7 351 62.4
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 1.5e-109 400.6 229 86.5
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.5e-109 400.6 213 89.2
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-105 387.1 225 84.4
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 6.7e-102 375.2 438 47.5
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 2.5e-101 373.2 225 82.2
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 5.0e-81 305.8 224 70.1
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 1.4e-70 271.2 202 69.3
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 4.0e-62 243.0 210 61.4
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 7.0e-59 232.3 355 41.1
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 2.0e-58 230.7 270 50.0
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 1.2e-55 221.5 130 79.2
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 1.1e-48 198.4 114 81.6
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 3.2e-48 196.8 122 75.4
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 2.8e-47 193.7 117 76.9
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 3.6e-39 166.8 94 78.7
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 6.1e-39 166.0 101 75.2
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 4.4e-37 159.8 83 90.4
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.0e-33 146.4 121 62.8
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 7.5e-29 132.5 77 87.0
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.7e-26 124.0 95 65.3
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.3e-22 110.9 77 68.8
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 2.4e-19 100.9 66 72.7
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 1.0e-17 95.5 71 67.6
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 6.6e-17 92.8 57 73.7
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 9.5e-16 89.0 60 70.0
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 2.9e-12 77.4 77 54.5
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 2.9e-12 77.4 54 72.2
C05p45940 Brassica napus HOM05D002849 ORTHO05D024297 1.4e-11 75.1 83 48.2
Actinidia17029 Actinidia chinensis HOM05D000148 ORTHO05D000081 1.7e-09 68.2 31 93.5
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.3e-09 67.8 34 79.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 8.7e-09 65.9 44 70.5
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 6.2e-07 59.7 38 73.7
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 6.2e-07 59.7 38 73.7


User provided reference genes

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