Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 3.7e-216 754.6 377 100.0
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.5e-129 466.8 380 63.9
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.9e-128 462.6 422 59.7
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 2.1e-126 456.4 364 64.8
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.7e-126 456.1 380 63.9
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 3.5e-126 455.7 367 65.1
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.5e-124 449.5 382 61.5
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 5.6e-124 448.4 355 66.2
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 4.0e-122 442.2 357 64.7
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 8.9e-122 441.0 377 62.1
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 8.9e-122 441.0 318 70.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 2.6e-121 439.5 352 63.9
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 1.3e-120 437.2 364 63.2
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 1.1e-119 434.1 368 62.5
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 1.9e-119 433.3 356 63.5
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.2e-118 430.6 350 63.4
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 2.1e-118 429.9 358 63.1
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.6e-118 428.7 373 62.7
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 6.0e-118 428.3 408 56.9
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.0e-117 427.6 356 63.5
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.3e-117 427.2 366 62.0
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 3.9e-117 425.6 355 62.5
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.9e-117 425.6 356 62.4
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.1e-116 424.1 356 62.1
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.3e-115 420.6 363 61.2
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 1.6e-115 420.2 319 66.5
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 2.1e-115 419.9 363 61.2
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 2.8e-115 419.5 361 62.0
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 1.1e-114 417.5 331 63.7
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 1.8e-114 416.8 375 58.7
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 1.8e-114 416.8 388 59.8
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.8e-114 416.8 369 61.8
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 3.1e-114 416.0 341 62.5
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 1.2e-113 414.1 373 59.8
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 7.6e-113 411.4 347 61.4
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 9.9e-113 411.0 350 60.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.3e-112 410.6 283 71.0
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 1.7e-112 410.2 367 58.6
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 4.9e-112 408.7 342 61.7
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 6.4e-112 408.3 326 63.5
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.4e-112 407.9 345 62.6
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.4e-111 407.1 354 60.5
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 1.4e-111 407.1 296 66.9
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 1.4e-111 407.1 363 59.8
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.4e-111 407.1 345 62.6
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 1.9e-111 406.8 334 63.5
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 4.2e-111 405.6 248 77.4
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 9.3e-111 404.4 344 60.2
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 2.1e-110 403.3 386 57.3
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 2.7e-110 402.9 363 59.5
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 3.5e-110 402.5 242 79.3
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 4.6e-110 402.1 377 58.4
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 4.6e-110 402.1 326 64.7
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 6.0e-110 401.7 383 57.2
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 6.0e-110 401.7 327 63.0
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 7.9e-110 401.4 330 63.0
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 1.0e-109 401.0 361 62.0
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.3e-109 400.6 392 56.6
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.3e-109 400.6 411 54.3
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 3.9e-109 399.1 375 58.4
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 5.1e-109 398.7 340 61.8
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 6.6e-109 398.3 383 56.4
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.1e-108 397.5 356 59.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.5e-108 397.1 352 59.1
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.9e-108 396.7 370 56.8
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 4.3e-108 395.6 296 68.2
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.3e-107 394.0 369 58.8
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 6.2e-107 391.7 385 57.1
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 6.2e-107 391.7 297 65.3
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 1.1e-106 391.0 330 57.9
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 1.8e-106 390.2 255 73.7
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.4e-106 389.8 285 68.1
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 3.1e-106 389.4 373 56.3
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 3.1e-106 389.4 330 62.7
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 5.3e-106 388.7 293 66.6
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 6.9e-106 388.3 337 58.5
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 2.0e-105 386.7 356 58.7
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 3.4e-105 386.0 370 58.1
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.6e-105 384.8 365 56.2
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 9.9e-105 384.4 291 61.5
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.3e-104 384.0 518 46.1
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 7.1e-103 378.3 329 58.7
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 7.1e-103 378.3 367 53.4
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 9.3e-103 377.9 342 58.2
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.5e-102 375.9 371 56.3
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 3.5e-102 375.9 313 62.3
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 3.5e-102 375.9 349 55.6
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 7.9e-102 374.8 358 54.7
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 1.8e-101 373.6 359 55.4
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 6.7e-101 371.7 325 58.2
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 4.3e-100 369.0 248 68.5
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 4.0e-98 362.5 316 57.0
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 1.5e-97 360.5 256 68.8
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 4.9e-96 355.5 326 59.2
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 1.9e-95 353.6 297 60.9
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.3e-95 351.3 366 53.8
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.2e-94 350.9 249 68.7
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.9e-94 348.2 373 54.7
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 1.0e-93 347.8 239 71.5
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 6.7e-93 345.1 370 54.1
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 4.8e-91 339.0 342 55.0
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 5.3e-90 335.5 256 64.8
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.6e-89 333.2 315 55.6
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 3.4e-89 332.8 239 66.9
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 5.9e-89 332.0 326 54.6
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 3.8e-88 329.3 362 50.0
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 1.9e-87 327.0 239 66.1
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 1.6e-86 323.9 240 64.6
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 2.1e-86 323.6 203 74.9
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 2.7e-86 323.2 226 69.0
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 4.6e-86 322.4 247 63.2
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.1e-84 317.8 239 64.0
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.5e-84 317.4 250 60.4
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 9.7e-84 314.7 352 50.0
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 1.8e-82 310.5 186 79.0
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 2.4e-82 310.1 248 61.7
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 5.3e-82 308.9 297 59.3
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 9.0e-82 308.1 186 80.1
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.3e-80 304.3 354 50.0
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 9.4e-79 298.1 262 58.8
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 4.6e-78 295.8 253 58.1
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 3.0e-77 293.1 192 71.9
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 9.7e-76 288.1 321 48.3
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 1.7e-75 287.3 170 79.4
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.2e-75 287.0 187 71.1
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 1.4e-71 274.2 200 65.0
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 7.4e-68 261.9 187 65.2
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 5.9e-65 252.3 257 56.4
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 9.7e-60 235.0 134 77.6
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 2.9e-56 223.4 233 49.4
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 3.1e-50 203.4 246 44.3
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 6.5e-48 195.7 269 42.8
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.8e-46 190.3 107 81.3
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 6.8e-45 185.7 114 72.8
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.8e-42 177.6 225 46.7
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 1.2e-41 174.9 104 77.9
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 4.5e-41 172.9 274 39.8
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 8.6e-32 142.1 99 68.7
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 1.6e-30 137.9 75 80.0
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.5e-28 131.3 100 60.0
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.5e-28 129.0 176 46.0
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 7.0e-26 122.5 108 60.2
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.2e-25 121.7 146 50.7
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 7.8e-25 119.0 69 76.8
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 1.7e-24 117.9 264 34.8
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 1.1e-23 115.2 68 76.5
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 1.2e-20 105.1 91 62.6
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.2e-18 97.1 74 63.5
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 3.5e-17 93.6 92 50.0
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 1.0e-16 92.0 156 39.7
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 4.3e-15 86.7 190 29.5
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 1.8e-13 81.3 240 31.2
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.1e-13 80.5 135 40.7
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 5.2e-13 79.7 155 41.3
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.2e-12 78.6 140 31.4
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 7.6e-12 75.9 188 30.3
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 9.9e-12 75.5 164 28.7
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 4.9e-11 73.2 51 60.8
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 5.4e-10 69.7 225 25.3
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 7.1e-10 69.3 60 55.0
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 6.0e-09 66.2 60 51.7
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.7e-08 64.7 150 27.3
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 1.1e-07 62.0 193 25.4
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.1e-07 62.0 199 26.1
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 2.5e-07 60.8 37 73.0
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.2e-06 58.5 196 24.0
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 2.8e-06 57.4 179 27.4
Thecc.04G185600 Theobroma cacao HOM05D004358 ORTHO05D004960 8.1e-06 55.8 32 78.1


User provided reference genes

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