Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 6.3e-262 907.1 538 100.0
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 6.2e-193 677.9 582 70.6
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 1.4e-189 666.8 583 76.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 7.1e-181 637.9 584 69.2
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 1.9e-173 613.2 584 66.3
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.0e-171 605.9 583 65.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 3.3e-170 602.4 584 69.0
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 4.3e-170 602.1 578 64.0
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 9.6e-170 600.9 584 64.7
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 9.6e-170 600.9 585 64.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 4.8e-169 598.6 592 62.5
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 1.1e-168 597.4 544 67.8
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.9e-168 594.7 586 64.8
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.5e-167 593.6 581 65.7
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 7.6e-167 591.3 584 61.1
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 1.9e-165 586.6 568 67.4
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 1.3e-163 580.5 583 65.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.8e-163 580.1 583 66.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 5.1e-163 578.6 580 63.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.3e-162 575.9 583 64.8
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 9.7e-162 574.3 581 58.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.3e-161 573.9 588 62.9
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.1e-160 569.3 586 61.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.0e-159 566.6 583 62.3
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.0e-159 566.6 541 62.3
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.3e-158 563.9 583 58.8
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.5e-158 561.2 631 61.0
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.5e-158 561.2 631 61.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.9e-157 560.1 591 60.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 5.5e-157 558.5 581 62.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 2.7e-156 556.2 578 63.7
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 3.6e-156 555.8 541 66.7
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 3.9e-155 552.4 586 56.1
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.1e-152 544.3 582 61.3
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 5.3e-152 542.0 588 58.5
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.9e-151 538.5 535 62.8
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.3e-150 537.3 584 57.0
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 5.0e-150 535.4 586 63.0
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 6.5e-150 535.0 581 65.6
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 8.5e-150 534.6 585 56.4
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.4e-149 533.9 591 62.3
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 2.5e-149 533.1 584 57.7
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 4.2e-149 532.3 584 60.3
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 9.4e-149 531.2 590 62.0
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 4.7e-148 528.9 598 61.9
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.9e-147 525.8 585 56.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.1e-146 524.2 582 60.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.0e-146 523.5 591 61.6
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.0e-146 523.5 532 67.5
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 3.3e-146 522.7 584 58.6
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 6.3e-145 518.5 590 60.0
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.4e-144 517.3 582 59.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.8e-144 516.9 617 58.7
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 2.9e-142 509.6 530 64.5
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.8e-142 509.2 543 58.6
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.8e-142 509.2 568 58.5
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 3.8e-142 509.2 582 57.6
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.1e-141 507.7 580 55.9
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.9e-141 506.9 582 60.8
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.5e-141 506.5 586 56.0
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-140 503.8 596 60.1
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-140 503.1 595 58.2
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 2.7e-140 503.1 584 52.7
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.0e-139 501.1 609 54.7
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.3e-139 500.0 580 54.1
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 5.2e-139 498.8 585 58.1
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.7e-138 495.4 579 54.1
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.8e-137 493.0 591 58.0
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 5.9e-135 485.3 584 52.6
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.3e-134 484.2 592 57.3
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.1e-132 476.9 591 54.8
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.7e-132 476.5 555 62.7
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.0e-130 470.3 588 58.7
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.4e-128 464.2 626 51.9
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 3.1e-128 463.0 536 59.7
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 7.0e-128 461.8 601 55.1
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 4.5e-127 459.1 542 53.5
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 4.5e-127 459.1 543 57.3
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.3e-126 457.6 588 56.8
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.3e-126 457.6 568 55.6
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.7e-126 457.2 601 53.1
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.8e-126 456.1 601 55.2
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 5.0e-126 455.7 585 53.0
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 5.0e-126 455.7 521 59.9
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.5e-125 453.4 585 57.6
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 3.2e-125 453.0 557 51.7
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.2e-124 451.1 589 57.2
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.7e-124 449.9 336 73.5
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 8.0e-124 448.4 569 51.0
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 2.3e-123 446.8 544 53.3
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 3.0e-123 446.4 543 54.1
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 4.0e-123 446.0 583 59.0
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 8.8e-123 444.9 582 53.8
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 8.3e-121 438.3 571 57.6
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.5e-119 432.6 619 50.6
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 5.0e-118 429.1 582 56.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 8.6e-118 428.3 600 55.8
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 7.2e-117 425.2 590 54.6
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 9.5e-117 424.9 587 55.7
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-116 424.5 589 55.5
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.2e-116 424.5 589 55.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 1.0e-115 421.4 537 59.2
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.4e-115 421.0 333 71.8
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 3.0e-115 419.9 587 55.4
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 4.0e-115 419.5 590 55.4
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 6.8e-115 418.7 587 57.1
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.4e-114 416.0 557 54.0
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 5.7e-114 415.6 494 59.1
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 2.7e-111 406.8 569 53.3
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 6.6e-110 402.1 570 55.1
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 7.3e-109 398.7 589 53.8
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.1e-108 397.1 511 55.0
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 5.2e-107 392.5 509 54.6
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.7e-105 387.5 573 51.5
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.6e-103 380.9 601 47.1
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 7.8e-103 378.6 333 63.7
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 7.8e-103 378.6 497 58.6
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 5.0e-102 375.9 572 50.7
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 9.2e-96 355.1 551 49.9
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.3e-94 351.3 391 63.4
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.7e-94 350.9 546 52.0
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.7e-94 350.9 546 52.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 3.3e-93 346.7 594 42.4
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.6e-92 344.4 437 56.3
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 2.1e-92 344.0 597 44.2
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 3.4e-90 336.7 592 46.1
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 7.6e-90 335.5 410 55.6
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 1.6e-87 327.8 461 57.7
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 8.6e-86 322.0 574 39.9
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 9.6e-85 318.5 516 44.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 4.7e-84 316.2 533 51.4
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 8.1e-84 315.5 207 74.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 3.4e-82 310.1 573 41.7
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-82 309.3 585 41.0
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.7e-81 307.8 585 40.9
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.8e-81 306.6 587 40.0
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.3e-80 302.0 579 40.8
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.7e-79 300.4 579 40.4
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 7.6e-74 282.3 331 64.7
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 4.8e-68 263.1 328 51.8
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.8e-66 256.1 346 50.6
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 3.1e-59 233.8 377 60.2
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 2.9e-57 227.3 397 51.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 2.1e-55 221.1 295 48.8
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.6e-50 204.1 355 49.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.4e-43 181.8 189 60.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-40 171.4 537 31.8
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.3e-35 153.3 113 66.4
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-32 142.9 236 40.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.3e-29 134.0 190 56.8
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.8e-25 120.6 142 71.1
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 5.2e-22 110.2 250 36.8
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 7.5e-21 106.3 211 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.7e-20 105.1 150 38.7
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.0e-19 99.8 111 46.8
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 9.1e-19 99.4 56 85.7
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 1.6e-18 98.6 542 26.2
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.9e-17 94.4 194 41.2
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 8.5e-17 92.8 67 59.7
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.5e-16 92.0 51 82.4
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.6e-15 87.4 144 48.6
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.4e-14 85.5 131 48.9
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 7.5e-13 79.7 93 53.8
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 7.5e-13 79.7 93 53.8
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.3e-12 79.0 131 45.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.7e-12 77.4 206 35.0
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 3.1e-11 74.3 57 61.4
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.5e-09 66.6 50 70.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.7e-07 61.2 102 41.2
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.0e-06 59.3 195 36.9
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 1.4e-06 58.9 172 29.1
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.4e-06 58.9 100 43.0
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-06 58.5 113 44.2


User provided reference genes

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