Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0508821 Helianthus annuus HOM05D002341 ORTHO05D003165 3.0e-84 315.1 151 100.0
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 3.1e-73 278.5 150 90.7
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 2.3e-68 262.3 150 83.3
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 6.6e-68 260.8 150 82.0
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
C04p60540 Brassica napus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
CSS0044190 Camellia sinensis var. sinensis HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
CDE02G3147 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.0
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
FAN05G4711 Fragaria x ananassa HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
unitig_747.g21299 Utricularia gibba HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 8.7e-68 260.4 150 82.7
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 1.1e-67 260.0 150 82.0
Aqoxy180s006 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.1e-67 260.0 150 82.7
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.1e-67 260.0 150 82.7
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.1e-67 260.0 150 82.0
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 1.1e-67 260.0 150 82.0
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.1e-67 260.0 150 82.0
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 1.1e-67 260.0 150 82.0
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 1.5e-67 259.6 150 82.7
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 1.5e-67 259.6 150 81.3
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
Dinv30610 Davidia involucrata HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 1.9e-67 259.2 150 82.0
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 2.5e-67 258.8 150 82.0
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 2.5e-67 258.8 150 82.0
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 2.5e-67 258.8 150 82.0
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 2.5e-67 258.8 150 82.7
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 2.5e-67 258.8 150 82.0
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 2.5e-67 258.8 150 82.0
SHI11229 Sapria himalayana HOM05D002341 ORTHO05D003165 2.5e-67 258.8 150 82.0
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 3.3e-67 258.5 150 82.0
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 4.3e-67 258.1 150 82.0
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 4.3e-67 258.1 150 82.0
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 4.3e-67 258.1 150 81.3
Prupe.3G223400 Prunus persica HOM05D002341 ORTHO05D003165 5.6e-67 257.7 150 81.3
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 9.6e-67 256.9 150 82.0
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 1.3e-66 256.5 150 80.0
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 1.3e-66 256.5 150 80.0
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 1.3e-66 256.5 150 80.0
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 2.1e-66 255.8 150 80.0
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 2.1e-66 255.8 150 80.0
C05p39600 Brassica napus HOM05D002341 ORTHO05D003165 2.8e-66 255.4 150 79.3
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 2.8e-66 255.4 150 80.0
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 1.1e-65 253.4 150 78.0
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 1.8e-65 252.7 150 78.7
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 5.3e-65 251.1 156 78.8
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 5.3e-65 251.1 156 78.8
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 6.9e-65 250.8 150 79.3
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 6.9e-65 250.8 149 77.2
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 1.2e-64 250.0 150 78.7
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 1.2e-64 250.0 150 78.7
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 1.5e-64 249.6 150 76.7
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 7.6e-64 247.3 150 77.3
CARHR222110 Cardamine hirsuta HOM05D002341 ORTHO05D003165 1.3e-63 246.5 148 78.4
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 4.9e-63 244.6 149 76.5
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 7.9e-61 237.3 138 81.9
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 2.3e-60 235.7 149 72.5
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.1e-59 233.4 150 71.3
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 5.6e-59 231.1 150 71.3
FvH4_6g43880 Fragaria vesca HOM05D002341 ORTHO05D003165 2.1e-58 229.2 150 70.7
FAN05G0659 Fragaria x ananassa HOM05D002341 ORTHO05D003165 2.1e-58 229.2 150 71.3
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 1.1e-57 226.9 150 74.0
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 1.1e-54 216.9 129 79.8
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 1.1e-54 216.9 129 78.3
Gohir.A05G122750 Gossypium hirsutum HOM05D002341 ORTHO05D003165 5.3e-49 198.0 114 82.5
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 1.2e-45 186.8 121 71.9
FAN09G4661 Fragaria x ananassa HOM05D002341 ORTHO05D003165 3.7e-42 175.3 116 70.7
SGA_v2.0_scaffold332G48967 Striga asiatica HOM05D002341 ORTHO05D003165 4.1e-41 171.8 144 60.4
Nitab4.5_0001200g0150 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.9e-35 152.9 126 63.5
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 5.9e-32 141.4 150 52.0
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 1.1e-14 84.0 50 76.0
Medtr1g060060 Medicago truncatula HOM05D002341 ORTHO05D003165 2.9e-07 59.3 35 80.0
Medtr1g060100 Medicago truncatula HOM05D002341 ORTHO05D003165 2.9e-07 59.3 35 80.0


User provided reference genes

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