Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0345831 Helianthus annuus HOM05D002594 ORTHO05D003499 1.4e-162 576.2 289 100.0
HanXRQChr03g0079451 Helianthus annuus HOM05D002594 ORTHO05D003499 1.5e-36 157.5 282 38.3
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 8.1e-22 108.6 118 52.5
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 1.8e-21 107.5 118 52.5
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 60.4
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 60.4
CsaV3_2G033800 Cucumis sativus L. HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 60.4
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 59.4
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 60.4
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 60.4
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 60.4
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 2.3e-21 107.1 96 60.4
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
Dinv05869 Davidia involucrata HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
FvH4_4g07440 Fragaria vesca HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 59.4
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 59.4
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 59.4
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 59.4
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 59.4
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 3.1e-21 106.7 101 59.4
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 60.4
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 3.1e-21 106.7 96 59.4
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 4.0e-21 106.3 118 51.7
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 4.0e-21 106.3 118 52.5
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 4.0e-21 106.3 118 52.5
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 4.0e-21 106.3 124 50.8
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 5.2e-21 105.9 96 60.4
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 5.2e-21 105.9 96 60.4
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 5.2e-21 105.9 96 59.4
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 5.2e-21 105.9 96 59.4
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 5.2e-21 105.9 96 59.4
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 5.2e-21 105.9 142 45.1
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 6.8e-21 105.5 118 51.7
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 6.8e-21 105.5 96 58.3
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 6.8e-21 105.5 96 58.3
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 6.8e-21 105.5 96 58.3
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 8.9e-21 105.1 96 58.3
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 8.9e-21 105.1 96 58.3
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 8.9e-21 105.1 96 59.4
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 8.9e-21 105.1 96 59.4
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 8.9e-21 105.1 142 45.1
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 8.9e-21 105.1 96 59.4
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 8.9e-21 105.1 96 59.4
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 8.9e-21 105.1 96 59.4
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 1.2e-20 104.8 96 59.4
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 1.2e-20 104.8 121 52.1
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 1.2e-20 104.8 96 59.4
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 1.2e-20 104.8 96 59.4
Lalb_Chr02g0145431 Lupinus albus HOM05D002594 ORTHO05D003499 1.2e-20 104.8 96 59.4
Lalb_Chr02g0145451 Lupinus albus HOM05D002594 ORTHO05D003499 1.2e-20 104.8 96 59.4
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 1.5e-20 104.4 96 56.2
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 1.5e-20 104.4 118 50.8
Sp1g13010 Schrenkiella parvula HOM05D002594 ORTHO05D003499 1.5e-20 104.4 114 51.8
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 1.5e-20 104.4 96 58.3
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 2.0e-20 104.0 109 51.4
BcaB03g13089 Brassica carinata HOM05D002594 ORTHO05D003499 2.0e-20 104.0 96 56.2
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 2.0e-20 104.0 96 56.2
A08p31890 Brassica napus HOM05D002594 ORTHO05D003499 2.0e-20 104.0 96 56.2
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 2.0e-20 104.0 96 56.2
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 2.0e-20 104.0 96 56.2
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 2.0e-20 104.0 96 56.2
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 2.0e-20 104.0 96 58.3
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 2.0e-20 104.0 142 45.8
Lalb_Chr06g0165601 Lupinus albus HOM05D002594 ORTHO05D003499 2.0e-20 104.0 142 45.8
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 2.0e-20 104.0 128 50.0
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 2.6e-20 103.6 109 51.4
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 2.6e-20 103.6 114 51.8
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 2.6e-20 103.6 109 51.4
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 2.6e-20 103.6 96 58.3
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 2.6e-20 103.6 130 48.5
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 2.6e-20 103.6 130 48.5
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 3.4e-20 103.2 96 57.3
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 3.4e-20 103.2 96 56.2
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 3.4e-20 103.2 96 56.2
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 3.4e-20 103.2 96 56.2
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 3.4e-20 103.2 96 56.2
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 3.4e-20 103.2 172 41.9
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 3.4e-20 103.2 118 49.2
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 3.4e-20 103.2 96 56.2
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 4.4e-20 102.8 119 50.4
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 4.4e-20 102.8 165 43.0
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 4.4e-20 102.8 96 58.3
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 4.4e-20 102.8 96 58.3
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 4.4e-20 102.8 96 59.4
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 4.4e-20 102.8 96 57.3
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 4.4e-20 102.8 96 59.4
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 4.4e-20 102.8 171 42.1
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 5.8e-20 102.4 127 48.8
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 5.8e-20 102.4 96 59.4
Dinv31273 Davidia involucrata HOM05D002594 ORTHO05D003499 5.8e-20 102.4 96 59.4
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 5.8e-20 102.4 96 57.3
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 5.8e-20 102.4 96 58.3
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 5.8e-20 102.4 96 59.4
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 5.8e-20 102.4 96 58.3
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 7.6e-20 102.1 96 59.4
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 7.6e-20 102.1 96 59.4
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 9.9e-20 101.7 96 59.4
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 9.9e-20 101.7 96 58.3
Lj5g0011873 Lotus japonicus HOM05D002594 ORTHO05D003499 9.9e-20 101.7 96 57.3
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 9.9e-20 101.7 118 51.7
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 1.3e-19 101.3 96 58.3
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 1.3e-19 101.3 96 57.3
Peaxi162Scf00420g00339 Petunia axillaris HOM05D002594 ORTHO05D003499 1.3e-19 101.3 96 58.3
CDE02G3426 Ceratophyllum demersum HOM05D002594 ORTHO05D003499 1.7e-19 100.9 96 57.3
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 1.7e-19 100.9 96 58.3
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 1.7e-19 100.9 96 58.3
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 1.7e-19 100.9 96 58.3
Aqoxy5G03555 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 2.2e-19 100.5 119 49.6
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 2.2e-19 100.5 96 55.2
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 2.9e-19 100.1 96 56.2
Thhalv10016290m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 2.9e-19 100.1 113 51.3
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 2.9e-19 100.1 96 57.3
Zm00001eb333220 Zea mays HOM05D002594 ORTHO05D003499 2.9e-19 100.1 96 57.3
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 3.7e-19 99.8 96 57.3
MSTRG.7590 Avicennia marina HOM05D002594 ORTHO05D003499 3.7e-19 99.8 96 57.3
Mapoly0053s0080 Marchantia polymorpha HOM05D002594 ORTHO05D003499 3.7e-19 99.8 96 55.2
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 3.7e-19 99.8 96 56.2
MD16G1250800 Malus domestica HOM05D002594 ORTHO05D003499 4.9e-19 99.4 96 57.3
Zm00001eb128190 Zea mays HOM05D002594 ORTHO05D003499 4.9e-19 99.4 118 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2665 Anthoceros agrestis HOM05D002594 ORTHO05D003499 6.4e-19 99.0 156 42.9
ECA247G2788 Erigeron canadensis HOM05D002594 ORTHO05D003499 8.3e-19 98.6 96 56.2
MBI03_g24017_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 8.3e-19 98.6 96 56.2
Pp3c23_15260 Physcomitrium patens HOM05D002594 ORTHO05D003499 8.3e-19 98.6 96 57.3
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 8.3e-19 98.6 96 56.2
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 1.1e-18 98.2 96 56.2
Pp3c18_11660 Physcomitrium patens HOM05D002594 ORTHO05D003499 1.1e-18 98.2 96 56.2
unitig_37.g12045 Utricularia gibba HOM05D002594 ORTHO05D003499 1.1e-18 98.2 96 56.2
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 1.9e-18 97.4 96 55.2
MD10G1329300 Malus domestica HOM05D002594 ORTHO05D003499 2.4e-18 97.1 171 42.1
HPP92_018926 Vanilla planifolia HOM05D002594 ORTHO05D003499 2.4e-18 97.1 96 55.2
HPP92_018935 Vanilla planifolia HOM05D002594 ORTHO05D003499 2.4e-18 97.1 96 55.2
Prupe.3G162200 Prunus persica HOM05D002594 ORTHO05D003499 3.2e-18 96.7 96 52.1
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 5.4e-18 95.9 117 49.6
AT1G14640 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 7.1e-18 95.5 96 54.2
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 9.2e-18 95.1 199 37.7
Atru.chr12.1112 Acer truncatum HOM05D002594 ORTHO05D003499 2.1e-17 94.0 117 48.7
AUR62002724 Chenopodium quinoa HOM05D002594 ORTHO05D003499 4.6e-17 92.8 96 54.2
Prupe.3G079300 Prunus persica HOM05D002594 ORTHO05D003499 4.6e-17 92.8 155 39.4
SMO116G0104 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 7.8e-17 92.0 96 49.0
BcaNung05664 Brassica carinata HOM05D002594 ORTHO05D003499 1.7e-16 90.9 95 52.6
RcHm_v2.0_Chr7g0192451 Rosa chinensis HOM05D002594 ORTHO05D003499 2.3e-16 90.5 99 55.6
RcHm_v2.0_Chr7g0191091 Rosa chinensis HOM05D002594 ORTHO05D003499 3.0e-16 90.1 156 41.0
RcHm_v2.0_Chr7g0192471 Rosa chinensis HOM05D002594 ORTHO05D003499 5.1e-16 89.4 99 54.5
CBR_g33984 Chara braunii HOM05D002594 ORTHO05D003499 3.3e-15 86.7 96 49.0
FvH4_5g06370 Fragaria vesca HOM05D002594 ORTHO05D003499 9.6e-15 85.1 99 53.5
FAN18G4310 Fragaria x ananassa HOM05D002594 ORTHO05D003499 2.1e-14 84.0 99 52.5
Cre06.g307450 Chlamydomonas reinhardtii HOM05D002594 ORTHO05D003499 3.6e-14 83.2 86 45.3
GSVIVG01012058001 Vitis vinifera HOM05D002594 ORTHO05D003499 4.7e-14 82.8 282 29.1
Cc09_g04870 Coffea canephora HOM05D002594 ORTHO05D003499 5.2e-13 79.3 63 55.6
Cc09_g04890 Coffea canephora HOM05D002594 ORTHO05D003499 8.9e-13 78.6 66 60.6
Cc00_g29290 Coffea canephora HOM05D002594 ORTHO05D003499 2.0e-12 77.4 123 38.2
Nitab4.5_0002805g0060 Nicotiana tabacum HOM05D002594 ORTHO05D003499 2.6e-12 77.0 75 53.3
MCO06G134 Micromonas commoda HOM05D002594 ORTHO05D003499 1.7e-11 74.3 78 44.9
Medtr7g063860 Medicago truncatula HOM05D002594 ORTHO05D003499 3.8e-11 73.2 92 48.9
BcaC05g25380 Brassica carinata HOM05D002594 ORTHO05D003499 8.4e-11 72.0 66 54.5
Oeu046918.1 Olea europaea HOM05D002594 ORTHO05D003499 1.1e-10 71.6 232 30.2
Cpa.g.sc1346.3 Carica papaya HOM05D002594 ORTHO05D003499 9.3e-10 68.6 84 42.9
HPP92_018925 Vanilla planifolia HOM05D002594 ORTHO05D003499 1.6e-09 67.8 137 34.3
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 2.1e-09 67.4 80 41.2
FAN08G0321 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.5e-09 66.6 97 45.4
BcaNung05662 Brassica carinata HOM05D002594 ORTHO05D003499 4.6e-09 66.2 165 32.1
ECA233G5663 Erigeron canadensis HOM05D002594 ORTHO05D003499 6.0e-09 65.9 63 44.4
Aa31LG6G11580 Aethionema arabicum HOM05D002594 ORTHO05D003499 1.0e-08 65.1 63 47.6
Migut.N00900 Erythranthe guttata HOM05D002594 ORTHO05D003499 3.9e-08 63.2 61 45.9
BcaC05g25379 Brassica carinata HOM05D002594 ORTHO05D003499 1.1e-07 61.6 158 30.4
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 2.5e-07 60.5 122 32.8
FAN04G1383 Fragaria x ananassa HOM05D002594 ORTHO05D003499 3.3e-07 60.1 97 43.3
MD05G1356100 Malus domestica HOM05D002594 ORTHO05D003499 5.6e-07 59.3 59 52.5
Peaxi162Scf00036g00164 Petunia axillaris HOM05D002594 ORTHO05D003499 5.6e-07 59.3 60 45.0
SMO364G0668 Selaginella moellendorffii HOM05D002594 ORTHO05D003499 2.1e-06 57.4 66 43.9
MD05G1356000 Malus domestica HOM05D002594 ORTHO05D003499 2.8e-06 57.0 132 31.1


User provided reference genes

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