Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 4.2e-91 338.2 194 100.0
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 1.1e-72 276.9 216 75.5
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.8e-62 243.0 264 54.9
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 5.4e-62 241.5 207 64.7
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 5.4e-54 214.9 248 53.2
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.5e-51 206.1 208 59.1
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 9.5e-51 204.1 206 59.7
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 2.1e-50 203.0 208 59.1
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 2.1e-50 203.0 206 60.2
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 4.7e-50 201.8 195 61.0
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 1.4e-49 200.3 209 63.6
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 5.2e-49 198.4 209 56.9
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.2e-48 197.2 205 59.5
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 1.2e-48 197.2 221 54.8
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.2e-48 197.2 195 60.0
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 2.0e-48 196.4 205 58.0
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 2.0e-48 196.4 206 57.8
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 2.6e-48 196.1 209 56.0
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 3.7e-47 192.2 207 57.0
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 1.2e-45 187.2 211 55.0
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 2.7e-45 186.0 205 57.6
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 3.0e-44 182.6 204 57.8
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 5.0e-44 181.8 209 54.1
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 5.0e-44 181.8 207 53.1
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 1.1e-43 180.6 203 54.7
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 1.5e-43 180.3 215 53.0
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 3.3e-43 179.1 203 54.2
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 9.5e-43 177.6 212 55.2
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 9.5e-43 177.6 204 54.9
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.2e-42 177.2 157 61.8
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-42 177.2 202 53.5
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.2e-42 177.2 202 53.5
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.8e-42 176.0 210 56.2
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 3.6e-42 175.6 206 55.3
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 4.7e-42 175.3 201 51.7
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 6.2e-42 174.9 204 55.4
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 8.0e-42 174.5 205 53.2
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 8.0e-42 174.5 198 56.6
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 8.0e-42 174.5 202 53.5
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.0e-41 174.1 211 53.6
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 1.0e-41 174.1 217 51.2
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.8e-41 173.3 210 51.9
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 1.8e-41 173.3 210 51.9
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 1.8e-41 173.3 202 53.0
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 4.0e-41 172.2 196 55.1
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 5.2e-41 171.8 210 53.8
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 5.2e-41 171.8 205 52.7
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 5.2e-41 171.8 212 52.4
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 6.8e-41 171.4 212 54.7
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 8.9e-41 171.0 217 52.5
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 1.2e-40 170.6 209 52.2
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 1.5e-40 170.2 211 52.6
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 2.6e-40 169.5 186 65.6
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 3.4e-40 169.1 204 54.4
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 4.4e-40 168.7 210 51.0
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 7.5e-40 167.9 221 50.7
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 1.3e-39 167.2 206 50.5
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 1.7e-39 166.8 210 50.0
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 2.2e-39 166.4 212 48.6
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 2.2e-39 166.4 188 57.4
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 4.9e-39 165.2 205 53.2
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.4e-39 164.9 204 55.4
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 1.1e-38 164.1 205 53.2
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 2.4e-38 162.9 205 53.2
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 4.1e-38 162.2 209 52.2
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 7.0e-38 161.4 221 55.7
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 7.0e-38 161.4 203 51.7
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.2e-37 160.6 207 51.2
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 1.6e-37 160.2 216 48.1
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 3.5e-37 159.1 179 59.8
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 7.8e-37 157.9 209 51.2
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 7.8e-37 157.9 207 48.8
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 1.0e-36 157.5 205 52.2
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 1.0e-36 157.5 210 50.5
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 1.3e-36 157.1 207 49.8
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 1.7e-36 156.8 200 57.5
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 3.9e-36 155.6 208 48.6
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 3.9e-36 155.6 208 56.2
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 5.0e-36 155.2 204 51.0
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 8.6e-36 154.5 131 67.2
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 8.6e-36 154.5 132 62.1
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.1e-35 154.1 149 64.4
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 1.5e-35 153.7 115 73.0
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 2.5e-35 152.9 205 53.2
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 3.3e-35 152.5 208 49.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 5.6e-35 151.8 238 47.1
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 2.1e-34 149.8 192 54.2
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 2.1e-34 149.8 141 60.3
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 3.6e-34 149.1 117 69.2
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 8.1e-34 147.9 137 62.8
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.4e-33 147.1 208 45.7
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 1.8e-33 146.7 185 51.9
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 8.9e-33 144.4 88 79.5
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.2e-32 144.1 199 49.2
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-32 143.3 202 48.5
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-32 143.3 126 65.1
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 2.6e-32 142.9 110 70.0
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 2.6e-32 142.9 115 69.6
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 7.5e-32 141.4 207 51.7
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 7.5e-32 141.4 151 58.3
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 1.3e-31 140.6 222 44.6
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.7e-31 140.2 153 54.2
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 1.7e-31 140.2 153 54.2
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 1.7e-31 140.2 206 47.1
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 2.2e-31 139.8 120 67.5
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 2.2e-31 139.8 120 67.5
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.9e-31 139.4 85 83.5
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 2.9e-31 139.4 113 69.0
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.9e-31 139.4 117 65.0
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.9e-31 139.4 117 65.0
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 3.7e-31 139.0 138 56.5
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 3.7e-31 139.0 147 59.2
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 4.9e-31 138.7 200 48.0
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 6.4e-31 138.3 205 50.2
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 6.4e-31 138.3 205 50.2
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 6.4e-31 138.3 186 50.0
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 8.3e-31 137.9 153 62.1
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.9e-30 136.7 131 61.8
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 1.9e-30 136.7 175 48.6
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.4e-30 136.3 185 49.2
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 3.2e-30 136.0 139 56.8
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 4.1e-30 135.6 220 44.1
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 5.4e-30 135.2 195 44.6
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 7.1e-30 134.8 193 48.7
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 9.2e-30 134.4 205 48.8
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 2.1e-29 133.3 238 42.9
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 2.1e-29 133.3 139 56.8
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.6e-29 132.1 187 49.2
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.7e-28 130.2 120 62.5
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 3.0e-28 129.4 193 50.8
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 3.0e-28 129.4 118 61.9
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 3.0e-28 129.4 201 51.2
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 3.0e-28 129.4 201 51.2
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 3.9e-28 129.0 93 66.7
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 3.9e-28 129.0 207 45.4
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 5.1e-28 128.6 193 44.0
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 8.6e-28 127.9 220 43.6
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 8.6e-28 127.9 220 43.6
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 8.6e-28 127.9 128 64.1
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.1e-27 127.5 124 60.5
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 1.1e-27 127.5 124 60.5
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.5e-27 127.1 142 54.9
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.9e-27 126.7 214 43.5
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.9e-27 126.7 196 46.9
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 3.3e-27 125.9 207 44.4
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 7.3e-27 124.8 127 59.8
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 2.8e-26 122.9 189 44.4
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.7e-26 122.1 104 65.4
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 4.7e-26 122.1 104 65.4
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 6.2e-26 121.7 219 45.7
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.4e-25 120.6 63 88.9
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 3.1e-25 119.4 118 61.0
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.5e-24 117.1 187 44.9
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-24 116.7 136 54.4
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 2.6e-24 116.3 207 43.5
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 5.8e-24 115.2 205 42.9
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.8e-24 115.2 69 81.2
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 5.8e-24 115.2 180 46.1
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 1.3e-23 114.0 161 52.2
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.4e-23 111.7 197 44.7
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 3.2e-22 109.4 132 54.5
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 7.1e-22 108.2 132 53.8
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 2.7e-21 106.3 62 75.8
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 5.1e-20 102.1 62 75.8
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 6.6e-20 101.7 199 40.7
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 8.6e-20 101.3 239 42.7
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 1.9e-19 100.1 56 82.1
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 2.5e-19 99.8 205 40.0
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 2.1e-18 96.7 171 44.4
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 1.7e-15 87.0 133 55.6
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.7e-15 87.0 137 45.3
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 2.7e-13 79.7 41 80.5
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 1.3e-12 77.4 109 48.6
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 1.7e-12 77.0 200 35.5
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 1.7e-12 77.0 200 35.5
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 3.6e-10 69.3 85 54.1
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 4.0e-09 65.9 65 53.8
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 4.5e-08 62.4 41 68.3
Lj5g0006065 Lotus japonicus HOM05D003686 ORTHO05D004322 1.4e-06 57.4 83 39.8


User provided reference genes

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