Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0054501 Helianthus annuus HOM05D005431 ORTHO05D006762 4.4e-259 897.5 473 100.0
Lsat_1_v5_gn_6_37921 Lactuca sativa HOM05D005431 ORTHO05D006762 4.5e-203 711.4 471 78.3
ECA233G5562 Erigeron canadensis HOM05D005431 ORTHO05D006762 6.4e-194 681.0 485 77.9
Lj1A1139T47 Lonicera japonica HOM05D005431 ORTHO05D006762 2.5e-169 599.4 482 68.0
Dinv18088 Davidia involucrata HOM05D005431 ORTHO05D006762 1.2e-168 597.0 484 67.4
Thecc.05G259000 Theobroma cacao HOM05D005431 ORTHO05D006762 6.1e-160 568.2 482 67.8
QL07p020652 Quercus lobata HOM05D005431 ORTHO05D006762 8.8e-159 564.3 457 68.7
COL.COLO4_08630 Corchorus olitorius HOM05D005431 ORTHO05D006762 1.1e-156 557.4 486 66.5
TAR633G0900 Trochodendron aralioides HOM05D005431 ORTHO05D006762 9.1e-156 554.3 486 64.8
CiPaw.10G000400 Carya illinoinensis HOM05D005431 ORTHO05D006762 1.6e-155 553.5 445 69.7
CSS0010563 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 2.6e-155 552.7 443 69.3
Sc24g0002060 Simmondsia chinensis HOM05D005431 ORTHO05D006762 4.5e-155 552.0 436 70.2
GSVIVG01020933001 Vitis vinifera HOM05D005431 ORTHO05D006762 5.9e-155 551.6 451 70.1
Gohir.A11G240400 Gossypium hirsutum HOM05D005431 ORTHO05D006762 1.7e-154 550.1 481 65.9
Oeu051845.1 Olea europaea HOM05D005431 ORTHO05D006762 3.8e-154 548.9 477 63.3
TWI32G0483 Tripterygium wilfordii HOM05D005431 ORTHO05D006762 5.0e-154 548.5 443 68.6
Lj1g0019204 Lotus japonicus HOM05D005431 ORTHO05D006762 1.5e-153 547.0 452 67.3
Gohir.D11G249800 Gossypium hirsutum HOM05D005431 ORTHO05D006762 9.4e-153 544.3 482 64.9
Duzib177G0804 Durio zibethinus HOM05D005431 ORTHO05D006762 5.2e-151 538.5 484 65.3
Potri.013G054300 Populus trichocarpa HOM05D005431 ORTHO05D006762 5.2e-151 538.5 483 65.4
AUR62035802 Chenopodium quinoa HOM05D005431 ORTHO05D006762 8.8e-151 537.7 470 65.1
MBI13_g30325_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 8.8e-151 537.7 446 70.0
Gorai.007G267600 Gossypium raimondii HOM05D005431 ORTHO05D006762 1.2e-150 537.3 480 64.6
CSS0005177 Camellia sinensis var. sinensis HOM05D005431 ORTHO05D006762 1.5e-150 537.0 443 68.8
arahy.Tifrunner.gnm1.ann1.UBW8VJ Arachis hypogaea HOM05D005431 ORTHO05D006762 2.0e-150 536.6 445 68.1
Manes.08G148100 Manihot esculenta HOM05D005431 ORTHO05D006762 3.3e-150 535.8 454 66.5
Prupe.6G097200 Prunus persica HOM05D005431 ORTHO05D006762 1.3e-149 533.9 457 65.0
Lalb_Chr14g0364381 Lupinus albus HOM05D005431 ORTHO05D006762 2.2e-149 533.1 457 65.2
MD03G1112900 Malus domestica HOM05D005431 ORTHO05D006762 2.8e-149 532.7 441 69.2
Eucgr.A02076 Eucalyptus grandis HOM05D005431 ORTHO05D006762 1.4e-148 530.4 451 68.7
Rhsim06G0113900 Rhododendron simsii HOM05D005431 ORTHO05D006762 1.4e-148 530.4 491 63.3
CANSAT78G0764 Cannabis sativa HOM05D005431 ORTHO05D006762 3.1e-148 529.3 476 63.2
Aqoxy6G02574 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 5.3e-148 528.5 453 65.1
Aqoxy2G02389 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 7.0e-148 528.1 452 64.4
Glyma.16G042800 Glycine max HOM05D005431 ORTHO05D006762 7.0e-148 528.1 460 63.7
Glyma.19G109200 Glycine max HOM05D005431 ORTHO05D006762 9.1e-148 527.7 465 64.1
PSO384G4368 Papaver somniferum HOM05D005431 ORTHO05D006762 2.7e-147 526.2 450 66.9
Ciclev10020067m.g Citrus clementina HOM05D005431 ORTHO05D006762 5.9e-147 525.0 460 66.1
Atru.chr2.1265 Acer truncatum HOM05D005431 ORTHO05D006762 8.5e-146 521.2 480 64.2
Peaxi162Scf00362g01188 Petunia axillaris HOM05D005431 ORTHO05D006762 8.5e-146 521.2 442 64.7
Sabra13G0049000 Salix brachista HOM05D005431 ORTHO05D006762 1.1e-145 520.8 474 64.1
Medtr7g085290 Medicago truncatula HOM05D005431 ORTHO05D006762 3.2e-145 519.2 467 64.2
PSO339G6142 Papaver somniferum HOM05D005431 ORTHO05D006762 4.2e-145 518.8 451 64.7
SalBow1G3497 Salvia bowleyana HOM05D005431 ORTHO05D006762 4.2e-145 518.8 440 65.7
Ca_08254_v3 Cicer arietinum L. HOM05D005431 ORTHO05D006762 7.2e-145 518.1 459 64.3
Solyc01g110820.4 Solanum lycopersicum HOM05D005431 ORTHO05D006762 1.6e-144 516.9 444 65.1
MSTRG.16956 Avicennia marina HOM05D005431 ORTHO05D006762 1.0e-143 514.2 450 61.6
HPP92_006679 Vanilla planifolia HOM05D005431 ORTHO05D006762 6.8e-143 511.5 466 62.9
FvH4_3g32950 Fragaria vesca HOM05D005431 ORTHO05D006762 2.0e-142 510.0 441 66.4
Phvul.001G100700 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.4e-142 509.2 461 61.8
PGR042G1130 Punica granatum HOM05D005431 ORTHO05D006762 4.4e-142 508.8 476 62.8
Cc10_g14020 Coffea canephora HOM05D005431 ORTHO05D006762 7.5e-142 508.1 470 63.0
PGSC0003DMG400001606 Solanum tuberosum HOM05D005431 ORTHO05D006762 7.5e-142 508.1 442 63.3
Cfa016425 Carpinus fangiana HOM05D005431 ORTHO05D006762 7.7e-139 498.0 426 68.1
FAN11G0735 Fragaria x ananassa HOM05D005431 ORTHO05D006762 7.7e-139 498.0 433 66.3
Sopen01g052890 Solanum pennellii HOM05D005431 ORTHO05D006762 1.0e-138 497.7 444 62.4
FAN16G2474 Fragaria x ananassa HOM05D005431 ORTHO05D006762 1.3e-138 497.3 446 61.4
Os03g0326600 Oryza sativa ssp. japonica HOM05D005431 ORTHO05D006762 1.5e-137 493.8 435 64.1
RcHm_v2.0_Chr5g0060221 Rosa chinensis HOM05D005431 ORTHO05D006762 6.1e-136 488.4 449 62.6
SGA_v2.0_scaffold32G13347 Striga asiatica HOM05D005431 ORTHO05D006762 8.9e-135 484.6 447 60.4
Psat3g089720 Pisum sativum HOM05D005431 ORTHO05D006762 2.0e-134 483.4 460 63.0
Zm00001eb015560 Zea mays HOM05D005431 ORTHO05D006762 3.4e-134 482.6 455 58.7
BolC5t29482H Brassica oleracea HOM05D005431 ORTHO05D006762 1.7e-133 480.3 453 57.2
Haze_19398 Corylus avellana HOM05D005431 ORTHO05D006762 1.7e-133 480.3 444 64.2
VMungo1383G2520 Vigna mungo HOM05D005431 ORTHO05D006762 2.8e-133 479.6 448 60.7
BraA06t23807Z Brassica rapa HOM05D005431 ORTHO05D006762 6.3e-133 478.4 448 57.8
THA.LOC104805792 Tarenaya hassleriana HOM05D005431 ORTHO05D006762 1.8e-132 476.9 443 61.2
Sp1g07840 Schrenkiella parvula HOM05D005431 ORTHO05D006762 3.1e-132 476.1 440 58.4
AT1G09230 Arabidopsis thaliana HOM05D005431 ORTHO05D006762 5.4e-132 475.3 435 59.1
CDE02G0906 Ceratophyllum demersum HOM05D005431 ORTHO05D006762 5.4e-132 475.3 458 61.8
Thhalv10007645m.g Eutrema salsugineum HOM05D005431 ORTHO05D006762 7.0e-132 474.9 447 57.0
Nitab4.5_0001364g0090 Nicotiana tabacum HOM05D005431 ORTHO05D006762 9.2e-132 474.6 416 65.6
TPR.G5901 Trifolium pratense HOM05D005431 ORTHO05D006762 3.5e-131 472.6 500 56.2
C05p07240 Brassica napus HOM05D005431 ORTHO05D006762 4.5e-131 472.2 440 57.5
A06p05970 Brassica napus HOM05D005431 ORTHO05D006762 7.3e-129 464.9 440 57.5
Duzib128G1128 Durio zibethinus HOM05D005431 ORTHO05D006762 8.0e-128 461.5 479 59.1
Nn7g35775 Nelumbo nucifera HOM05D005431 ORTHO05D006762 8.0e-128 461.5 442 57.7
ATR0782G102 Amborella trichopoda HOM05D005431 ORTHO05D006762 1.4e-127 460.7 451 59.6
Carub.0001s0857 Capsella rubella HOM05D005431 ORTHO05D006762 5.2e-127 458.8 445 56.6
vmacro12472 Vaccinium macrocarpon HOM05D005431 ORTHO05D006762 2.9e-125 453.0 628 49.4
BcaC05g24779 Brassica carinata HOM05D005431 ORTHO05D006762 5.4e-124 448.7 448 54.9
AL1G19720 Arabidopsis lyrata HOM05D005431 ORTHO05D006762 2.0e-123 446.8 434 56.9
Aa31LG1G5950 Aethionema arabicum HOM05D005431 ORTHO05D006762 2.8e-120 436.4 460 53.9
Actinidia02566 Actinidia chinensis HOM05D005431 ORTHO05D006762 4.7e-120 435.6 346 69.9
Cfa011866 Carpinus fangiana HOM05D005431 ORTHO05D006762 1.3e-117 427.6 380 66.6
arahy.Tifrunner.gnm1.ann1.H79Q9S Arachis hypogaea HOM05D005431 ORTHO05D006762 4.9e-117 425.6 445 57.8
SEGI_41626 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 9.2e-116 421.4 444 54.7
EL10Ac8g19795 Beta vulgaris HOM05D005431 ORTHO05D006762 3.5e-115 419.5 321 73.5
Haze_21236 Corylus avellana HOM05D005431 ORTHO05D006762 1.3e-114 417.5 381 65.4
Migut.C00530 Erythranthe guttata HOM05D005431 ORTHO05D006762 1.5e-110 404.1 315 66.7
AUR62027554 Chenopodium quinoa HOM05D005431 ORTHO05D006762 2.2e-109 400.2 404 57.2
Sed0005030 Sechium edule HOM05D005431 ORTHO05D006762 9.2e-108 394.8 356 62.9
Cpa.g.sc594.2 Carica papaya HOM05D005431 ORTHO05D006762 5.8e-102 375.6 366 63.4
arahy.Tifrunner.gnm1.ann1.M3GFZ7 Arachis hypogaea HOM05D005431 ORTHO05D006762 1.9e-97 360.5 399 58.4
CsaV3_6G010080 Cucumis sativus L. HOM05D005431 ORTHO05D006762 2.1e-96 357.1 306 68.6
Potri.019G031700 Populus trichocarpa HOM05D005431 ORTHO05D006762 3.2e-92 343.2 319 64.9
Pp3c5_17010 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.1e-88 330.5 400 52.0
SMO339G0047 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 5.3e-87 325.9 398 50.0
GSVIVG01010770001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.1e-83 313.9 263 69.2
AagrBONN_evm.TU.Sc2ySwM_228.5426 Anthoceros agrestis HOM05D005431 ORTHO05D006762 3.7e-80 303.1 341 51.9
ClCG02G009850 Citrullus lanatus HOM05D005431 ORTHO05D006762 2.6e-78 297.0 265 66.8
CARHR009190 Cardamine hirsuta HOM05D005431 ORTHO05D006762 6.4e-77 292.4 271 58.3
Aqoxy113s003 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 8.7e-66 255.4 418 41.6
Hund08532 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.3e-61 241.5 376 46.8
Mapoly0054s0019 Marchantia polymorpha HOM05D005431 ORTHO05D006762 1.7e-61 241.1 283 50.5
Rhsim03G0115400 Rhododendron simsii HOM05D005431 ORTHO05D006762 5.0e-53 213.0 341 45.7
CBR_g41665 Chara braunii HOM05D005431 ORTHO05D006762 7.2e-52 209.1 585 31.1
BcaB03g13279 Brassica carinata HOM05D005431 ORTHO05D006762 2.7e-51 207.2 183 56.8
AagrBONN_evm.TU.Sc2ySwM_117.3064__3065 Anthoceros agrestis HOM05D005431 ORTHO05D006762 2.5e-44 184.1 259 48.6
Lsat_1_v5_gn_3_133701 Lactuca sativa HOM05D005431 ORTHO05D006762 2.1e-43 181.0 165 66.7
Hund08530 Selenicereus undatus HOM05D005431 ORTHO05D006762 1.3e-40 171.8 102 83.3
Cpa.g.sc3384.1 Carica papaya HOM05D005431 ORTHO05D006762 3.8e-37 160.2 101 77.2
Phvul.004G137800 Phaseolus vulgaris HOM05D005431 ORTHO05D006762 3.8e-37 160.2 92 80.4
GSVIVG01010771001 Vitis vinifera HOM05D005431 ORTHO05D006762 2.7e-35 154.1 155 57.4
MELO3C013491.2 Cucumis melo HOM05D005431 ORTHO05D006762 8.8e-34 149.1 181 56.9
MBI05_g45098_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 1.5e-33 148.3 178 61.8
TPR.G5899 Trifolium pratense HOM05D000002 ORTHO05D000001 2.7e-30 137.5 172 55.8
TPR.G552 Trifolium pratense HOM05D005431 ORTHO05D006762 6.8e-26 122.9 107 65.4
MBI05_g33993_MAGBIO Magnolia biondii HOM05D005431 ORTHO05D006762 5.7e-25 119.8 99 62.6
Aqoxy6G02072 Aquilegia oxysepala HOM05D005431 ORTHO05D006762 5.5e-20 103.2 338 31.1
Pp3c25_8310 Physcomitrium patens HOM05D005431 ORTHO05D006762 2.8e-19 100.9 113 46.9
SHI14717 Sapria himalayana HOM05D005431 ORTHO05D006762 5.2e-18 96.7 106 54.7
TPR.G5921 Trifolium pratense HOM05D005431 ORTHO05D006762 5.2e-18 96.7 54 81.5
AagrBONN_evm.TU.Sc2ySwM_228.2880 Anthoceros agrestis HOM05D005431 ORTHO05D006762 9.2e-15 85.9 138 37.7
SHI14712 Sapria himalayana HOM05D000001 ORTHO05D009229 9.2e-15 85.9 45 82.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 7.8e-14 82.8 61 68.9
C08p12570 Brassica napus HOM05D005431 ORTHO05D006762 2.3e-13 81.3 49 77.6
BolC8t48895H Brassica oleracea HOM05D005431 ORTHO05D006762 2.3e-13 81.3 49 77.6
SMO116G0263 Selaginella moellendorffii HOM05D005431 ORTHO05D006762 4.3e-12 77.0 83 44.6
Lsat_1_v5_gn_6_94960 Lactuca sativa HOM05D005431 ORTHO05D003355 1.8e-10 71.6 130 36.9
RcHm_v2.0_Chr5g0076741 Rosa chinensis HOM05D005431 ORTHO05D006762 2.3e-10 71.2 62 61.3
SHI14714 Sapria himalayana HOM05D005431 ORTHO05D006762 2.3e-10 71.2 52 63.5
CAN.G134.235 Capsicum annuum HOM05D005431 ORTHO05D006762 4.0e-10 70.5 56 55.4
SGA_v2.0_scaffold612G53193 Striga asiatica HOM05D005431 ORTHO05D006762 1.5e-09 68.6 65 47.7
SEGI_17961 Sequoiadendron giganteum HOM05D005431 ORTHO05D006762 9.8e-09 65.9 110 39.1
Ah.14g086750 Amaranthus hybridus HOM05D005431 ORTHO05D006762 1.7e-08 65.1 39 76.9
ClCG02G009830 Citrullus lanatus HOM05D005431 ORTHO05D006762 8.3e-08 62.8 41 73.2
SHI14719 Sapria himalayana HOM05D005431 ORTHO05D006762 1.1e-07 62.4 33 84.8


User provided reference genes

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