Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 9.6e-128 460.3 255 100.0
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.9e-99 366.3 242 85.5
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.0e-68 264.2 246 69.5
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.1e-65 252.7 247 64.8
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 5.8e-64 248.4 245 65.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 7.5e-64 248.1 245 64.9
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 9.8e-64 247.7 242 60.7
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 6.4e-63 245.0 242 67.8
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.9e-62 243.4 224 63.8
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 3.2e-62 242.7 244 64.8
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 2.0e-61 240.0 223 64.6
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 2.0e-61 240.0 253 61.3
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.7e-61 239.6 224 64.7
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.7e-61 239.6 245 63.3
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 3.5e-61 239.2 244 63.9
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 3.5e-61 239.2 223 64.6
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.0e-60 237.7 223 63.2
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.9e-60 235.7 245 61.6
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.9e-60 235.7 244 62.7
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.9e-60 235.7 223 65.5
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 6.6e-60 235.0 246 63.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 8.6e-60 234.6 243 61.3
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.5e-59 233.8 222 64.9
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.5e-59 233.0 246 58.9
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.5e-59 233.0 244 63.9
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 2.5e-59 233.0 244 61.1
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 3.3e-59 232.6 245 60.8
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 9.5e-59 231.1 242 62.4
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.2e-58 230.7 224 64.3
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.6e-58 230.3 224 64.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.6e-58 230.3 223 64.6
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 4.7e-58 228.8 245 61.6
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 6.2e-58 228.4 244 60.7
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 8.1e-58 228.0 244 61.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.1e-57 227.6 244 63.9
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.4e-57 227.3 248 61.7
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 1.4e-57 227.3 223 62.3
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.8e-57 226.9 221 63.3
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.3e-57 226.5 244 64.3
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.3e-57 226.5 246 62.2
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 4.0e-57 225.7 244 63.5
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 3.4e-56 222.6 255 56.9
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.3e-55 220.7 250 57.6
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 1.9e-54 216.9 236 56.8
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 4.1e-54 215.7 236 61.4
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 5.4e-54 215.3 251 57.4
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 7.1e-54 214.9 211 66.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 1.2e-53 214.2 187 66.3
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.2e-53 214.2 219 60.3
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 2.7e-53 213.0 211 65.9
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 4.6e-53 212.2 215 61.9
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.0e-53 211.8 219 61.2
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.3e-52 210.7 219 61.2
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 5.1e-52 208.8 245 60.4
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.6e-52 208.4 219 60.7
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.5e-51 207.2 224 59.4
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 1.9e-51 206.8 224 58.0
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.9e-51 206.8 224 58.0
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.5e-51 206.5 228 58.3
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.3e-51 206.1 223 57.8
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 3.3e-51 206.1 244 61.5
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 5.6e-51 205.3 245 58.4
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.6e-50 203.8 234 52.1
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 2.1e-50 203.4 246 54.9
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 3.6e-50 202.6 229 57.2
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 4.7e-50 202.2 246 59.8
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 6.2e-50 201.8 225 57.3
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 2.3e-49 199.9 214 57.5
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 2.3e-49 199.9 237 52.3
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 3.1e-49 199.5 243 55.1
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 4.0e-49 199.1 223 58.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.0e-49 199.1 228 54.8
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 4.0e-49 199.1 228 54.8
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 5.2e-49 198.7 258 53.1
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 6.8e-49 198.4 255 52.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.0e-48 196.8 220 57.7
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 2.0e-48 196.8 245 57.6
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 4.4e-48 195.7 225 58.2
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 9.9e-48 194.5 222 56.3
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 1.3e-47 194.1 245 56.3
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 4.9e-47 192.2 250 56.4
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 8.3e-47 191.4 221 52.9
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 8.3e-47 191.4 245 56.3
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 8.3e-47 191.4 199 60.8
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.3e-47 191.4 244 52.9
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.3e-47 191.4 244 52.9
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.4e-46 190.7 280 51.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.9e-46 190.3 230 55.2
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 7.1e-46 188.3 246 56.1
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 9.2e-46 188.0 249 55.8
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-45 187.6 215 62.3
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 2.1e-45 186.8 212 58.5
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 2.1e-45 186.8 212 58.5
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.1e-45 186.8 212 58.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.5e-45 186.0 188 61.2
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 6.0e-45 185.3 258 55.0
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 7.8e-45 184.9 239 55.6
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-44 184.5 240 55.4
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 1.0e-44 184.5 240 55.4
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-44 184.1 242 50.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.7e-44 183.7 240 55.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.7e-44 183.7 240 55.4
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.3e-44 183.3 193 57.5
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 2.3e-44 183.3 191 61.3
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 5.1e-44 182.2 193 58.0
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.5e-43 180.6 222 52.3
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 2.5e-43 179.9 242 47.5
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 5.6e-43 178.7 243 55.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 7.3e-43 178.3 189 60.3
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.6e-43 177.9 231 51.1
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.6e-42 177.2 224 54.9
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.6e-42 177.2 185 57.3
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 2.8e-42 176.4 255 48.6
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 8.1e-42 174.9 189 60.3
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.1e-41 174.5 246 53.3
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.8e-41 173.7 197 59.4
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 4.0e-41 172.6 205 56.1
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.4e-40 169.1 202 53.5
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-40 168.7 202 53.0
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-40 168.7 202 53.0
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 7.6e-40 168.3 202 59.4
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 2.9e-39 166.4 201 52.2
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.8e-39 166.0 202 53.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-38 164.5 202 54.5
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 3.2e-38 162.9 256 46.5
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 5.4e-38 162.2 216 51.4
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 9.3e-38 161.4 190 53.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 2.1e-37 160.2 171 59.6
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.0e-36 157.9 239 52.7
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.3e-36 157.5 223 52.0
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 1.7e-36 157.1 253 46.2
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.5e-35 154.1 202 53.5
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 3.3e-35 152.9 223 50.2
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 3.3e-35 152.9 234 46.2
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 4.3e-35 152.5 222 50.9
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 9.0e-33 144.8 244 50.0
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 4.4e-32 142.5 243 48.6
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 3.2e-30 136.3 180 53.3
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.0e-29 132.1 176 53.4
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 3.9e-28 129.4 227 41.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.6e-26 122.9 181 47.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 3.1e-25 119.8 206 44.7
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 8.4e-23 111.7 104 66.3
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.2e-21 107.8 91 70.3
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.0e-21 105.5 194 39.7
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 3.0e-20 103.2 194 39.7
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 8.7e-20 101.7 59 81.4
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 3.1e-17 93.2 225 42.2
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 6.5e-15 85.5 227 41.0
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.5e-14 83.6 223 39.5
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.7e-13 80.1 67 59.7
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.0e-13 79.0 74 59.5
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-12 77.4 153 34.0
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.5e-11 74.3 43 88.4
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.5e-08 64.3 77 53.2
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 3.2e-06 56.6 57 57.9


User provided reference genes

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