Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.2e-287 991.1 525 100.0
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 4.1e-173 612.1 538 66.2
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 1.1e-170 604.0 536 65.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.0e-168 595.9 540 64.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.6e-167 592.8 540 64.3
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 3.5e-164 582.4 546 62.6
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 7.7e-164 581.3 543 61.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 8.5e-163 577.8 533 62.5
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 5.5e-162 575.1 541 63.6
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 5.5e-162 575.1 540 61.7
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 9.4e-162 574.3 539 63.6
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 1.6e-161 573.5 535 61.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.0e-160 570.9 539 63.3
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.3e-160 569.7 537 62.0
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 3.4e-159 565.8 540 61.1
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 7.5e-159 564.7 539 60.5
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 6.3e-158 561.6 551 62.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 8.3e-158 561.2 528 63.4
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.4e-157 560.5 540 62.2
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.6e-156 557.0 543 60.4
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.6e-156 557.0 543 61.9
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 3.5e-156 555.8 539 61.4
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 3.5e-156 555.8 540 60.9
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.9e-155 552.7 546 61.2
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 2.9e-155 552.7 547 62.0
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 5.0e-155 552.0 546 60.1
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.5e-154 549.7 531 60.6
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 3.2e-154 549.3 537 61.5
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 3.6e-153 545.8 540 61.5
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.8e-152 543.5 553 60.4
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 5.2e-152 542.0 542 59.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.8e-150 536.2 586 57.3
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.8e-150 536.2 586 57.3
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.4e-149 533.9 537 59.8
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 5.9e-148 528.5 540 60.2
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 7.7e-148 528.1 550 60.0
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 2.3e-147 526.6 542 59.6
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 3.8e-147 525.8 547 57.6
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 6.6e-147 525.0 547 59.6
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.5e-146 523.9 548 59.3
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 7.3e-146 521.5 493 62.5
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.2e-145 520.8 539 58.8
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 6.1e-145 518.5 548 59.3
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.4e-144 517.3 550 55.6
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.0e-144 515.8 531 58.8
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 8.9e-144 514.6 539 58.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.2e-143 514.2 549 57.9
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 1.5e-143 513.8 538 58.7
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 2.0e-143 513.5 554 57.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 3.4e-143 512.7 542 58.1
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 3.7e-142 509.2 538 57.4
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 1.1e-141 507.7 541 56.9
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.4e-141 507.3 540 58.5
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 3.2e-141 506.1 541 57.9
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 9.2e-141 504.6 536 58.6
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 2.7e-140 503.1 557 56.9
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.5e-140 502.7 546 55.5
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 3.0e-139 499.6 536 56.0
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 5.0e-139 498.8 543 57.8
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 6.6e-139 498.4 565 54.7
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.9e-138 496.9 574 55.4
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 1.9e-138 496.9 480 63.1
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 5.6e-138 495.4 539 57.3
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 9.5e-138 494.6 579 52.5
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 4.7e-137 492.3 543 57.3
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 2.3e-136 490.0 579 54.1
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 4.0e-136 489.2 543 56.7
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.4e-135 486.1 547 55.8
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 3.7e-134 482.6 544 56.1
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 8.3e-134 481.5 554 53.4
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 5.4e-133 478.8 555 54.2
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 2.0e-132 476.9 480 59.8
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.0e-132 476.9 574 53.8
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 6.0e-132 475.3 554 54.7
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 1.7e-131 473.8 529 56.9
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 6.6e-131 471.9 541 55.5
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 6.6e-131 471.9 500 58.4
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 8.6e-131 471.5 537 56.6
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.5e-130 470.7 507 58.6
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 1.9e-130 470.3 499 58.1
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 2.1e-129 466.8 511 56.6
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.6e-129 466.1 360 68.6
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 4.7e-129 465.7 549 53.7
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 6.2e-129 465.3 557 53.1
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 1.1e-128 464.5 536 54.9
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.8e-128 463.8 542 55.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 8.9e-128 461.5 544 54.4
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 1.2e-127 461.1 546 54.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 1.2e-127 461.1 546 54.4
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 7.5e-127 458.4 544 54.2
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 7.5e-127 458.4 555 54.4
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.3e-126 457.6 546 54.0
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-126 456.8 572 50.7
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 2.2e-126 456.8 538 55.6
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 4.9e-126 455.7 539 54.0
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.1e-125 454.5 541 55.6
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 1.1e-125 454.5 534 53.7
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.9e-125 453.8 540 54.6
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.7e-124 449.9 546 53.1
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 4.6e-124 449.1 511 55.8
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 1.0e-123 448.0 540 55.7
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 7.3e-122 441.8 554 51.6
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 2.6e-119 433.3 542 54.4
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 3.4e-119 433.0 530 54.9
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 5.8e-119 432.2 537 50.5
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 1.3e-118 431.0 532 52.6
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.9e-118 429.9 516 53.7
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 3.2e-117 426.4 539 52.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 4.1e-117 426.0 541 52.7
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 2.1e-116 423.7 552 52.4
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 1.5e-114 417.5 533 51.0
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.4e-112 411.0 540 50.4
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 4.4e-111 406.0 839 38.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 4.2e-109 399.4 539 48.1
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 9.3e-109 398.3 554 46.4
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 6.0e-108 395.6 493 54.4
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 6.0e-108 395.6 553 47.7
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 5.1e-107 392.5 587 46.3
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 6.6e-107 392.1 544 50.0
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 6.6e-107 392.1 323 66.9
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 1.5e-106 391.0 461 56.6
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.6e-105 387.5 526 50.8
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.6e-105 387.5 526 50.8
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.0e-103 380.6 465 52.9
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 1.3e-99 367.9 546 48.7
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.6e-98 362.5 242 85.5
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 8.1e-97 358.6 541 46.2
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 3.4e-95 353.2 539 46.0
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.5e-95 352.8 539 45.1
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.6e-95 352.1 539 46.0
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.7e-94 350.9 541 46.2
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.2e-93 346.3 532 46.4
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.1e-93 345.5 532 46.4
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 7.9e-92 342.0 411 58.4
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 9.0e-88 328.6 452 51.1
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 1.2e-87 328.2 424 51.4
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 7.1e-85 318.9 510 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 2.3e-83 313.9 364 50.0
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 7.6e-79 298.9 195 71.3
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 7.4e-74 282.3 367 54.5
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 3.4e-71 273.5 322 57.8
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.0e-70 269.6 338 49.1
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 3.7e-65 253.4 311 51.1
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 2.5e-61 240.7 357 50.7
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 9.4e-61 238.8 368 51.4
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.4e-58 229.2 494 37.2
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 9.1e-56 222.2 306 54.2
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-54 218.0 101 100.0
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.1e-40 172.2 105 92.4
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-35 154.8 243 43.6
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 7.3e-29 132.9 219 48.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.2e-28 132.1 176 54.5
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 2.3e-27 127.9 267 40.1
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 1.5e-26 125.2 181 47.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.2e-23 115.5 196 45.4
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 5.9e-23 113.2 140 42.1
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.7e-22 111.7 104 66.3
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.1e-21 109.0 239 40.2
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-19 102.4 219 44.3
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.4e-18 97.1 314 28.0
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.8e-18 96.7 227 39.2
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 1.0e-14 85.9 51 74.5
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.6e-14 83.2 208 37.0
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 5.6e-13 80.1 67 59.7
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.8e-11 75.1 54 59.3
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 2.3e-11 74.7 66 62.1
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.3e-11 74.7 66 62.1
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 2.3e-11 74.7 59 57.6
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 1.7e-09 68.6 95 49.5
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 8.3e-09 66.2 155 40.6
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 1.9e-08 65.1 121 44.6
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.4e-08 64.7 100 47.0
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 5.4e-08 63.5 165 27.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.5e-07 60.8 113 38.1
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 7.8e-07 59.7 53 60.4
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.9e-06 57.4 46 65.2
MCO05G517 Micromonas commoda HOM05D003850 ORTHO05D004515 6.6e-06 56.6 485 25.4


User provided reference genes

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